Gene name: SFT2
Reference locus (S288C): YBL102W
Gene biotype: protein_coding
Description: Tetra-spanning membrane protein found mostly in the late Golgi; non-essential; can suppress some sed5 alleles; may be part of the transport machinery, but precise function is unknown; similar to mammalian syntaxin 5; Belongs to the SFT2 family
Top 10 interactors (score): SFT1 (0.96); SED5 (0.958); GOS1 (0.895); GOT1 (0.884); NOP8 (0.852); SEC22 (0.825); COG6 (0.784); YPT6 (0.764); RUD3 (0.751); APS3 (0.742); GMH1 (0.738); APL6 (0.703); TLG2 (0.691); TOA1 (0.683); APL4 (0.673); GDI1 (0.671); COG5 (0.67); VTI1 (0.669); YKT6 (0.659); COG8 (0.656)
Homologues (species, bitscore): SFT2D3 (Homo sapiens, 52.4); Sft2d3 (Mus musculus, 62.0); sft2d3 (Danio rerio, 68.9); sft2d3 (Xenopus tropicalis, 63.2); CG33635 (Drosophila melanogaster, 89.0); C18E9.10 (Caenorhabditis elegans, 96.3); AT4G26550 (Arabidopsis thaliana, 86.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:24007-24654:+ | gene-YBL102W_AKU4011 | rna-NM_001178342.1_AKU4011 | cds-NP_009448.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:14719-15366:+ | gene-YBL102W_BG1 | rna-NM_001178342.1_BG1 | cds-NP_009448.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:24391-25038:+ | gene-YBL102W_Bruggeman | rna-NM_001178342.1_Bruggeman | cds-NP_009448.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:26585-27232:+ | gene-YBL102W_CAT1 | rna-NM_001178342.1_CAT1 | cds-NP_009448.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:16078-16725:+ | gene-YBL102W_CBS1585 | rna-NM_001178342.1_CBS1585 | cds-NP_009448.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:19018-19665:+ | gene-YBL102W_CBS436 | rna-NM_001178342.1_CBS436 | cds-NP_009448.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:15866-16513:+ | gene-YBL102W_CBS6412 | rna-NM_001178342.1_CBS6412 | cds-NP_009448.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:22208-22855:+ | gene-YBL102W_CBS6413 | rna-NM_001178342.1_CBS6413 | cds-NP_009448.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:18029-18676:+ | gene-YBL102W_CENPK1137D | rna-NM_001178342.1_CENPK1137D | cds-NP_009448.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:38250-38897:+ | gene-YBL102W_EthanolRed | rna-NM_001178342.1_EthanolRed | cds-NP_009448.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:38382-39029:+ | gene-YBL102W_FaliES1 | rna-NM_001178342.1_FaliES1 | cds-NP_009448.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000184.1:15412-16059:+ | gene-YBL102W_JAY291 | rna-NM_001178342.1_JAY291 | cds-NP_009448.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:23522-24169:+ | gene-YBL102W_MUCL30387 | rna-NM_001178342.1_MUCL30387 | cds-NP_009448.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:24428-25075:+ | gene-YBL102W_MUCL30388 | rna-NM_001178342.1_MUCL30388 | cds-NP_009448.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:16234-16881:+ | gene-YBL102W_MUCL39482 | rna-NM_001178342.1_MUCL39482 | cds-NP_009448.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:22874-23521:+ | gene-YBL102W_MUCL42920 | rna-NM_001178342.1_MUCL42920 | cds-NP_009448.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:23895-24542:+ | gene-YBL102W_NCIM3186 | rna-NM_001178342.1_NCIM3186 | cds-NP_009448.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:17906-18553:+ | gene-YBL102W_NCYC1407 | rna-NM_001178342.1_NCYC1407 | cds-NP_009448.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:24202-24849:+ | gene-YBL102W_PE2H3 | rna-NM_001178342.1_PE2H3 | cds-NP_009448.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:21834-22481:+ | gene-YBL102W_PE2H4 | rna-NM_001178342.1_PE2H4 | cds-NP_009448.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:24098-24745:+ | gene-YBL102W_S288C | rna-NM_001178342.1_S288C | cds-NP_009448.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:14517-15164:+ | gene-YBL102W_SA1 | rna-NM_001178342.1_SA1 | cds-NP_009448.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:38344-38991:+ | gene-YBL102W_ThermosaccDry | rna-NM_001178342.1_ThermosaccDry | cds-NP_009448.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:20547-21194:+ | gene-YBL102W_VR1 | rna-NM_001178342.1_VR1 | cds-NP_009448.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:15569-16216:+ | gene-YBL102W_ZTW1 | rna-NM_001178342.1_ZTW1 | cds-NP_009448.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:50509-51156:+ | gene-YBL102W_Sparadoxus | rna-NM_001178342.1_Sparadoxus | cds-NP_009448.1_Sparadoxus | 91.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |