Gene name: SFH1
Reference locus (S288C): YLR321C
Gene biotype: protein_coding
Description: Chromatin structure-remodeling complex subunit SFH1; Component of the RSC chromatin remodeling complex; essential gene required for cell cycle progression and maintenance of proper ploidy; phosphorylated in the G1 phase of the cell cycle; Snf5p paralog; hSNF5 tumor suppressor ortholog
Top 10 interactors (score): RSC4 (0.999); RSC6 (0.999); ARP7 (0.999); STH1 (0.999); RSC8 (0.999); RSC2 (0.999); NPL6 (0.998); ARP9 (0.998); RSC9 (0.998); RSC3 (0.997); RTT102 (0.995); RSC58 (0.995); RSC1 (0.994); HTL1 (0.992); RSC30 (0.986); LDB7 (0.985); SNF2 (0.924); SWI3 (0.91); ARP4 (0.886); SNF12 (0.885)
Homologues (species, bitscore): SMARCB1 (Homo sapiens, 116.3); Smarcb1 (Mus musculus, 116.3); smarcb1b (Danio rerio, 117.1); smarcb1 (Xenopus tropicalis, 115.5); Snr1 (Drosophila melanogaster, 102.4); snfc-5 (Caenorhabditis elegans, 102.4); BSH (Arabidopsis thaliana, 76.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:725038-726318:- | gene-YLR321C_AKU4011 | rna-NM_001182210.1_AKU4011 | cds-NP_013425.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:6364-7644:+ | gene-YLR321C_BG1 | rna-NM_001182210.1_BG1 | cds-NP_013425.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:760871-762151:- | gene-YLR321C_Bruggeman | rna-NM_001182210.1_Bruggeman | cds-NP_013425.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:759026-760306:- | gene-YLR321C_CAT1 | rna-NM_001182210.1_CAT1 | cds-NP_013425.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:759954-761234:- | gene-YLR321C_CBS1585 | rna-NM_001182210.1_CBS1585 | cds-NP_013425.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:744554-745834:- | gene-YLR321C_CBS436 | rna-NM_001182210.1_CBS436 | cds-NP_013425.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:797909-799189:- | gene-YLR321C_CBS6412 | rna-NM_001182210.1_CBS6412 | cds-NP_013425.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:760626-761906:- | gene-YLR321C_CBS6413 | rna-NM_001182210.1_CBS6413 | cds-NP_013425.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:761198-762478:- | gene-YLR321C_CENPK1137D | rna-NM_001182210.1_CENPK1137D | cds-NP_013425.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:718321-719601:- | gene-YLR321C_EthanolRed | rna-NM_001182210.1_EthanolRed | cds-NP_013425.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:747522-748802:- | gene-YLR321C_FaliES1 | rna-NM_001182210.1_FaliES1 | cds-NP_013425.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000296.1:19055-20335:+ | gene-YLR321C_JAY291 | rna-NM_001182210.1_JAY291 | cds-NP_013425.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:760097-761377:- | gene-YLR321C_MUCL30387 | rna-NM_001182210.1_MUCL30387 | cds-NP_013425.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:765683-766963:- | gene-YLR321C_MUCL30388 | rna-NM_001182210.1_MUCL30388 | cds-NP_013425.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:761195-762475:- | gene-YLR321C_MUCL39482 | rna-NM_001182210.1_MUCL39482 | cds-NP_013425.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:756346-757626:- | gene-YLR321C_MUCL42920 | rna-NM_001182210.1_MUCL42920 | cds-NP_013425.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:776558-777838:- | gene-YLR321C_NCIM3186 | rna-NM_001182210.1_NCIM3186 | cds-NP_013425.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:770535-771815:- | gene-YLR321C_NCYC1407 | rna-NM_001182210.1_NCYC1407 | cds-NP_013425.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:758318-759598:- | gene-YLR321C_PE2H3 | rna-NM_001182210.1_PE2H3 | cds-NP_013425.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:758062-759342:- | gene-YLR321C_PE2H4 | rna-NM_001182210.1_PE2H4 | cds-NP_013425.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:776584-777864:- | gene-YLR321C_S288C | rna-NM_001182210.1_S288C | cds-NP_013425.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000039.1:6445-7725:+ | gene-YLR321C_SA1 | rna-NM_001182210.1_SA1 | cds-NP_013425.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:749414-750694:- | gene-YLR321C_ThermosaccDry | rna-NM_001182210.1_ThermosaccDry | cds-NP_013425.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:761534-762814:- | gene-YLR321C_VR1 | rna-NM_001182210.1_VR1 | cds-NP_013425.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:87827-89107:- | gene-YLR321C_ZTW1 | rna-NM_001182210.1_ZTW1 | cds-NP_013425.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:735556-736839:- | gene-YLR321C_Sparadoxus | rna-NM_001182210.1_Sparadoxus | cds-NP_013425.1_Sparadoxus | 90.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |