Gene name: SEY1
Reference locus (S288C): YOR165W
Gene biotype: protein_coding
Description: Protein SEY1; Dynamin-like GTPase that mediates homotypic ER fusion; has a role in ER morphology; interacts physically and genetically with Yop1p and Rtn1p; functional ortholog of the human atlastin ATL1, defects in which cause a form of the human disease hereditary spastic paraplegia; homolog of Arabidopsis RHD3; Belongs to the TRAFAC class dynamin-like GTPase superfamily. GB1/RHD3-type GTPase family. RHD3 subfamily
Top 10 interactors (score): YOP1 (0.997); UFE1 (0.985); RTN1 (0.985); RTN2 (0.955); LNP1 (0.949); POM33 (0.948); SED4 (0.918); USE1 (0.902); SCS3 (0.875); SEC22 (0.87); SEC20 (0.853); ICE2 (0.827); DGK1 (0.747); SEC63 (0.741); PER33 (0.723); GLO3 (0.712); SCS2 (0.692); SEC39 (0.688); YKT6 (0.682); APM1 (0.643)
Homologues (species, bitscore): AT1G72960 (Arabidopsis thaliana, 293.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:642204-644534:+ | gene-YOR165W_AKU4011 | rna-NM_001183584.1_AKU4011 | cds-NP_014808.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:43959-46289:+ | gene-YOR165W_BG1 | rna-NM_001183584.1_BG1 | cds-NP_014808.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:626278-628608:+ | gene-YOR165W_Bruggeman | rna-NM_001183584.1_Bruggeman | cds-NP_014808.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:626297-628627:+ | gene-YOR165W_CAT1 | rna-NM_001183584.1_CAT1 | cds-NP_014808.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:624699-627029:+ | gene-YOR165W_CBS1585 | rna-NM_001183584.1_CBS1585 | cds-NP_014808.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:622994-625324:+ | gene-YOR165W_CBS436 | rna-NM_001183584.1_CBS436 | cds-NP_014808.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:622311-624641:+ | gene-YOR165W_CBS6412 | rna-NM_001183584.1_CBS6412 | cds-NP_014808.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:630992-633322:+ | gene-YOR165W_CBS6413 | rna-NM_001183584.1_CBS6413 | cds-NP_014808.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:644325-646655:+ | gene-YOR165W_CENPK1137D | rna-NM_001183584.1_CENPK1137D | cds-NP_014808.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:618408-620738:+ | gene-YOR165W_EthanolRed | rna-NM_001183584.1_EthanolRed | cds-NP_014808.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:623261-625591:+ | gene-YOR165W_FaliES1 | rna-NM_001183584.1_FaliES1 | cds-NP_014808.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000070.1:17950-20280:- | gene-YOR165W_JAY291 | rna-NM_001183584.1_JAY291 | cds-NP_014808.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:631085-633415:+ | gene-YOR165W_MUCL30387 | rna-NM_001183584.1_MUCL30387 | cds-NP_014808.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:637848-640178:+ | gene-YOR165W_MUCL30388 | rna-NM_001183584.1_MUCL30388 | cds-NP_014808.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:632540-634870:+ | gene-YOR165W_MUCL39482 | rna-NM_001183584.1_MUCL39482 | cds-NP_014808.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:641962-644292:+ | gene-YOR165W_MUCL42920 | rna-NM_001183584.1_MUCL42920 | cds-NP_014808.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:644455-646785:+ | gene-YOR165W_NCIM3186 | rna-NM_001183584.1_NCIM3186 | cds-NP_014808.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:632626-634956:+ | gene-YOR165W_NCYC1407 | rna-NM_001183584.1_NCYC1407 | cds-NP_014808.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:631139-633469:+ | gene-YOR165W_PE2H3 | rna-NM_001183584.1_PE2H3 | cds-NP_014808.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:641516-643846:+ | gene-YOR165W_PE2H4 | rna-NM_001183584.1_PE2H4 | cds-NP_014808.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:644566-646896:+ | gene-YOR165W_S288C | rna-NM_001183584.1_S288C | cds-NP_014808.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:61124-63454:+ | gene-YOR165W_SA1 | rna-NM_001183584.1_SA1 | cds-NP_014808.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:622444-624774:+ | gene-YOR165W_ThermosaccDry | rna-NM_001183584.1_ThermosaccDry | cds-NP_014808.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:686141-688471:+ | gene-YOR165W_VR1 | rna-NM_001183584.1_VR1 | cds-NP_014808.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:355892-358222:+ | gene-YOR165W_ZTW1 | rna-NM_001183584.1_ZTW1 | cds-NP_014808.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:627517-629847:+ | gene-YOR165W_Sparadoxus | rna-NM_001183584.1_Sparadoxus | cds-NP_014808.1_Sparadoxus | 90.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |