Gene name: SET6
Reference locus (S288C): YPL165C
Gene biotype: protein_coding
Description: Potential protein lysine methyltransferase SET6; SET domain protein of unknown function; deletion heterozygote is sensitive to compounds that target ergosterol biosynthesis, may be involved in compound availability
Top 10 interactors (score): SET5 (0.936); SET4 (0.93); SET2 (0.896); SET1 (0.879); EFM1 (0.812); SET3 (0.803); RKM1 (0.792); ECM5 (0.773); RPH1 (0.765); RKM4 (0.76); CTM1 (0.76); TVP18 (0.744); GIS1 (0.723); SFM1 (0.721); HAT2 (0.708); MSI1 (0.691); YGR283C (0.688); JHD2 (0.687); HMT1 (0.678); HOS2 (0.67)
Homologues (species, bitscore): SMYD2 (Homo sapiens, 55.1); Smyd3 (Mus musculus, 53.1); smyd3 (Danio rerio, 57.4); smyd4 (Xenopus tropicalis, 60.1); SDG35 (Arabidopsis thaliana, 65.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:215629-216750:- | gene-YPL165C_AKU4011 | rna-NM_001183979.1_AKU4011 | cds-NP_015160.1_AKU4011 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:421287-422408:- | gene-YPL165C_BG1 | rna-NM_001183979.1_BG1 | cds-NP_015160.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:241611-242732:- | gene-YPL165C_Bruggeman | rna-NM_001183979.1_Bruggeman | cds-NP_015160.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:238282-239403:- | gene-YPL165C_CAT1 | rna-NM_001183979.1_CAT1 | cds-NP_015160.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:219691-220812:- | gene-YPL165C_CBS1585 | rna-NM_001183979.1_CBS1585 | cds-NP_015160.1_CBS1585 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:234345-235466:- | gene-YPL165C_CBS436 | rna-NM_001183979.1_CBS436 | cds-NP_015160.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:224368-225489:- | gene-YPL165C_CBS6412 | rna-NM_001183979.1_CBS6412 | cds-NP_015160.1_CBS6412 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:216328-217449:- | gene-YPL165C_CBS6413 | rna-NM_001183979.1_CBS6413 | cds-NP_015160.1_CBS6413 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:237840-238961:- | gene-YPL165C_CENPK1137D | rna-NM_001183979.1_CENPK1137D | cds-NP_015160.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:214369-215490:- | gene-YPL165C_EthanolRed | rna-NM_001183979.1_EthanolRed | cds-NP_015160.1_EthanolRed | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:221961-223082:- | gene-YPL165C_FaliES1 | rna-NM_001183979.1_FaliES1 | cds-NP_015160.1_FaliES1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:142829-143950:+ | gene-YPL165C_JAY291 | rna-NM_001183979.1_JAY291 | cds-NP_015160.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:232855-233976:- | gene-YPL165C_MUCL30387 | rna-NM_001183979.1_MUCL30387 | cds-NP_015160.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:230876-231997:- | gene-YPL165C_MUCL30388 | rna-NM_001183979.1_MUCL30388 | cds-NP_015160.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:213020-214141:- | gene-YPL165C_MUCL39482 | rna-NM_001183979.1_MUCL39482 | cds-NP_015160.1_MUCL39482 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:269743-270864:- | gene-YPL165C_MUCL42920 | rna-NM_001183979.1_MUCL42920 | cds-NP_015160.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:237939-239060:- | gene-YPL165C_NCIM3186 | rna-NM_001183979.1_NCIM3186 | cds-NP_015160.1_NCIM3186 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:219476-220597:- | gene-YPL165C_NCYC1407 | rna-NM_001183979.1_NCYC1407 | cds-NP_015160.1_NCYC1407 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:226907-228028:- | gene-YPL165C_PE2H3 | rna-NM_001183979.1_PE2H3 | cds-NP_015160.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:226550-227671:- | gene-YPL165C_PE2H4 | rna-NM_001183979.1_PE2H4 | cds-NP_015160.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:237956-239077:- | gene-YPL165C_S288C | rna-NM_001183979.1_S288C | cds-NP_015160.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:134604-135725:+ | gene-YPL165C_SA1 | rna-NM_001183979.1_SA1 | cds-NP_015160.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:221759-222880:- | gene-YPL165C_ThermosaccDry | rna-NM_001183979.1_ThermosaccDry | cds-NP_015160.1_ThermosaccDry | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:236678-237799:- | gene-YPL165C_VR1 | rna-NM_001183979.1_VR1 | cds-NP_015160.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:221087-222208:- | gene-YPL165C_ZTW1 | rna-NM_001183979.1_ZTW1 | cds-NP_015160.1_ZTW1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:222661-223782:- | gene-YPL165C_Sparadoxus | rna-NM_001183979.1_Sparadoxus | cds-NP_015160.1_Sparadoxus | 90.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |