Gene name: SET5
Reference locus (S288C): YHR207C
Gene biotype: protein_coding
Description: Putative protein lysine methyltransferase SET5; Methyltransferase involved in methylation of histone H4 Lys5, -8, -12; S-adenosylmethionine-dependent; zinc-finger protein, contains one canonical and two unusual fingers in unusual arrangements; deletion enhances replication of positive-strand RNA virus; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET5 subfamily
Top 10 interactors (score): SET1 (0.956); HHF1 (0.945); SET6 (0.936); SET4 (0.914); SET2 (0.895); RKM1 (0.824); HAT2 (0.824); HHF2 (0.8); SET3 (0.768); YGR283C (0.758); EFM4 (0.728); YMR310C (0.727); NNT1 (0.719); HHT2 (0.716); HHT1 (0.716); SDC1 (0.704); RPH1 (0.702); GIS1 (0.702); MSI1 (0.691); EFM1 (0.685)
Homologues (species, bitscore): SMYD3 (Homo sapiens, 55.8); Smyd3 (Mus musculus, 56.2); smyd5 (Danio rerio, 58.5); CG3353 (Drosophila melanogaster, 60.1); SDG38 (Arabidopsis thaliana, 65.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:501959-503539:- | gene-YHR207C_AKU4011 | rna-NM_001179338.1_AKU4011 | cds-NP_012077.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:14197-15777:+ | gene-YHR207C_BG1 | rna-NM_001179338.1_BG1 | cds-NP_012077.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:509444-511024:- | gene-YHR207C_Bruggeman | rna-NM_001179338.1_Bruggeman | cds-NP_012077.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:505991-507571:- | gene-YHR207C_CAT1 | rna-NM_001179338.1_CAT1 | cds-NP_012077.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:501377-502957:- | gene-YHR207C_CBS1585 | rna-NM_001179338.1_CBS1585 | cds-NP_012077.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:499496-501076:- | gene-YHR207C_CBS436 | rna-NM_001179338.1_CBS436 | cds-NP_012077.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:501494-503074:- | gene-YHR207C_CBS6412 | rna-NM_001179338.1_CBS6412 | cds-NP_012077.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:502763-504343:- | gene-YHR207C_CBS6413 | rna-NM_001179338.1_CBS6413 | cds-NP_012077.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:508183-509763:- | gene-YHR207C_CENPK1137D | rna-NM_001179338.1_CENPK1137D | cds-NP_012077.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:560512-562092:- | gene-YHR207C_EthanolRed | rna-NM_001179338.1_EthanolRed | cds-NP_012077.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:502963-504543:- | gene-YHR207C_FaliES1 | rna-NM_001179338.1_FaliES1 | cds-NP_012077.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000071.1:9717-11297:- | gene-YHR207C_JAY291 | rna-NM_001179338.1_JAY291 | cds-NP_012077.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:510542-512122:- | gene-YHR207C_MUCL30387 | rna-NM_001179338.1_MUCL30387 | cds-NP_012077.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:510198-511778:- | gene-YHR207C_MUCL30388 | rna-NM_001179338.1_MUCL30388 | cds-NP_012077.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:501494-503074:- | gene-YHR207C_MUCL39482 | rna-NM_001179338.1_MUCL39482 | cds-NP_012077.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:516832-518412:- | gene-YHR207C_MUCL42920 | rna-NM_001179338.1_MUCL42920 | cds-NP_012077.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:514787-516367:- | gene-YHR207C_NCIM3186 | rna-NM_001179338.1_NCIM3186 | cds-NP_012077.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:503794-505374:- | gene-YHR207C_NCYC1407 | rna-NM_001179338.1_NCYC1407 | cds-NP_012077.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:502965-504545:- | gene-YHR207C_PE2H3 | rna-NM_001179338.1_PE2H3 | cds-NP_012077.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:510392-511972:- | gene-YHR207C_PE2H4 | rna-NM_001179338.1_PE2H4 | cds-NP_012077.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:514905-516485:- | gene-YHR207C_S288C | rna-NM_001179338.1_S288C | cds-NP_012077.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000112.1:9772-11352:- | gene-YHR207C_SA1 | rna-NM_001179338.1_SA1 | cds-NP_012077.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:504232-505812:- | gene-YHR207C_ThermosaccDry | rna-NM_001179338.1_ThermosaccDry | cds-NP_012077.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:513234-514814:- | gene-YHR207C_VR1 | rna-NM_001179338.1_VR1 | cds-NP_012077.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:494292-495872:- | gene-YHR207C_ZTW1 | rna-NM_001179338.1_ZTW1 | cds-NP_012077.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:500996-502576:- | gene-YHR207C_Sparadoxus | rna-NM_001179338.1_Sparadoxus | cds-NP_012077.1_Sparadoxus | 90.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |