Gene name: SET3
Reference locus (S288C): YKR029C
Gene biotype: protein_coding
Description: Defining member of the SET3 histone deacetylase complex; which is a meiosis-specific repressor of sporulation genes; necessary for efficient transcription by RNAPII; one of two yeast proteins that contains both SET and PHD domains; SET3 has a paralog, SET4, that arose from the whole genome duplication
Top 10 interactors (score): SNT1 (0.999); SIF2 (0.999); HOS4 (0.998); CPR1 (0.997); HOS2 (0.997); HST1 (0.976); SET1 (0.974); PHO23 (0.97); CTI6 (0.966); RXT2 (0.966); SIN3 (0.965); RPD3 (0.954); SDS3 (0.946); SAP30 (0.937); DEP1 (0.937); TOS4 (0.93); SWR1 (0.921); UME1 (0.916); RXT3 (0.912); UME6 (0.911)
Homologues (species, bitscore): ASH1L (Homo sapiens, 68.9); Kmt2e (Mus musculus, 67.4); kmt2e (Danio rerio, 72.8); kmt2e (Xenopus tropicalis, 67.0); upSET (Drosophila melanogaster, 78.2); set-9 (Caenorhabditis elegans, 53.1); MMD1 (Arabidopsis thaliana, 50.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:483240-485495:- | gene-YKR029C_AKU4011 | rna-NM_001179819.3_AKU4011 | cds-NP_012954.3_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:157978-160233:+ | gene-YKR029C_BG1 | rna-NM_001179819.3_BG1 | cds-NP_012954.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:505170-507425:- | gene-YKR029C_Bruggeman | rna-NM_001179819.3_Bruggeman | cds-NP_012954.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:500667-502922:- | gene-YKR029C_CAT1 | rna-NM_001179819.3_CAT1 | cds-NP_012954.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:495980-498235:- | gene-YKR029C_CBS1585 | rna-NM_001179819.3_CBS1585 | cds-NP_012954.3_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:494821-497076:- | gene-YKR029C_CBS436 | rna-NM_001179819.3_CBS436 | cds-NP_012954.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:480141-482396:- | gene-YKR029C_CBS6412 | rna-NM_001179819.3_CBS6412 | cds-NP_012954.3_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:495809-498064:- | gene-YKR029C_CBS6413 | rna-NM_001179819.3_CBS6413 | cds-NP_012954.3_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:497320-499575:- | gene-YKR029C_CENPK1137D | rna-NM_001179819.3_CENPK1137D | cds-NP_012954.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:493708-495761:- | gene-YKR029C_EthanolRed | rna-NM_001179819.3_EthanolRed | cds-NP_012954.3_EthanolRed | 89.0 | 90.5 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:496639-498894:- | gene-YKR029C_FaliES1 | rna-NM_001179819.3_FaliES1 | cds-NP_012954.3_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000077.1:54851-57106:+ | gene-YKR029C_JAY291 | rna-NM_001179819.3_JAY291 | cds-NP_012954.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:505575-507830:- | gene-YKR029C_MUCL30387 | rna-NM_001179819.3_MUCL30387 | cds-NP_012954.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:499930-502185:- | gene-YKR029C_MUCL30388 | rna-NM_001179819.3_MUCL30388 | cds-NP_012954.3_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:495298-497553:- | gene-YKR029C_MUCL39482 | rna-NM_001179819.3_MUCL39482 | cds-NP_012954.3_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:501333-503588:- | gene-YKR029C_MUCL42920 | rna-NM_001179819.3_MUCL42920 | cds-NP_012954.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:497567-499822:- | gene-YKR029C_NCIM3186 | rna-NM_001179819.3_NCIM3186 | cds-NP_012954.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:495504-497759:- | gene-YKR029C_NCYC1407 | rna-NM_001179819.3_NCYC1407 | cds-NP_012954.3_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:520505-522760:- | gene-YKR029C_PE2H3 | rna-NM_001179819.3_PE2H3 | cds-NP_012954.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:505228-507483:- | gene-YKR029C_PE2H4 | rna-NM_001179819.3_PE2H4 | cds-NP_012954.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:497578-499833:- | gene-YKR029C_S288C | rna-NM_001179819.3_S288C | cds-NP_012954.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000078.1:13916-16183:+ | gene-YKR029C_SA1 | rna-NM_001179819.3_SA1 | cds-NP_012954.3_SA1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:495892-498147:- | gene-YKR029C_ThermosaccDry | rna-NM_001179819.3_ThermosaccDry | cds-NP_012954.3_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:495525-497780:- | gene-YKR029C_VR1 | rna-NM_001179819.3_VR1 | cds-NP_012954.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:493939-496194:- | gene-YKR029C_ZTW1 | rna-NM_001179819.3_ZTW1 | cds-NP_012954.3_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:519238-521481:- | gene-YKR029C_Sparadoxus | rna-NM_001179819.3_Sparadoxus | cds-NP_012954.3_Sparadoxus | 86.7 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |