Gene name: SER1
Reference locus (S288C): YOR184W
Gene biotype: protein_coding
Description: O-phospho-L-serine:2-oxoglutarate transaminase; 3-phosphoserine aminotransferase; catalyzes the formation of phosphoserine from 3-phosphohydroxypyruvate, required for serine and glycine biosynthesis; regulated by the general control of amino acid biosynthesis mediated by Gcn4p; protein abundance increases in response to DNA replication stress; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily
Top 10 interactors (score): SER33 (0.999); SER3 (0.999); SER2 (0.998); THR4 (0.974); MCY1 (0.947); SHM2 (0.921); CWC2 (0.9); GCV3 (0.853); MTD1 (0.836); GCV1 (0.825); ARG5,6 (0.805); PDX3 (0.802); ADE3 (0.798); GCV2 (0.778); ARO7 (0.774); ALT2 (0.769); TRP5 (0.744); SHM1 (0.742); MIS1 (0.737); HOM3 (0.736)
Homologues (species, bitscore): PSAT1 (Homo sapiens, 276.2); Psat1 (Mus musculus, 270.0); psat1 (Danio rerio, 289.7); psat1 (Xenopus tropicalis, 276.9); CG11899 (Drosophila melanogaster, 265.4); F26H9.5 (Caenorhabditis elegans, 260.0); AT2G17630 (Arabidopsis thaliana, 294.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:676685-677872:+ | gene-YOR184W_AKU4011 | rna-NM_001183603.3_AKU4011 | cds-NP_014827.3_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:78742-79929:+ | gene-YOR184W_BG1 | rna-NM_001183603.3_BG1 | cds-NP_014827.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:660698-661885:+ | gene-YOR184W_Bruggeman | rna-NM_001183603.3_Bruggeman | cds-NP_014827.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:661872-663059:+ | gene-YOR184W_CAT1 | rna-NM_001183603.3_CAT1 | cds-NP_014827.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:659674-660861:+ | gene-YOR184W_CBS1585 | rna-NM_001183603.3_CBS1585 | cds-NP_014827.3_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:657793-658980:+ | gene-YOR184W_CBS436 | rna-NM_001183603.3_CBS436 | cds-NP_014827.3_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:656790-657977:+ | gene-YOR184W_CBS6412 | rna-NM_001183603.3_CBS6412 | cds-NP_014827.3_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:665431-666618:+ | gene-YOR184W_CBS6413 | rna-NM_001183603.3_CBS6413 | cds-NP_014827.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:679107-680294:+ | gene-YOR184W_CENPK1137D | rna-NM_001183603.3_CENPK1137D | cds-NP_014827.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:652662-653849:+ | gene-YOR184W_EthanolRed | rna-NM_001183603.3_EthanolRed | cds-NP_014827.3_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:657735-658922:+ | gene-YOR184W_FaliES1 | rna-NM_001183603.3_FaliES1 | cds-NP_014827.3_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000038.1:18618-19805:- | gene-YOR184W_JAY291 | rna-NM_001183603.3_JAY291 | cds-NP_014827.3_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:665503-666690:+ | gene-YOR184W_MUCL30387 | rna-NM_001183603.3_MUCL30387 | cds-NP_014827.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:672919-674106:+ | gene-YOR184W_MUCL30388 | rna-NM_001183603.3_MUCL30388 | cds-NP_014827.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:667004-668191:+ | gene-YOR184W_MUCL39482 | rna-NM_001183603.3_MUCL39482 | cds-NP_014827.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:676390-677577:+ | gene-YOR184W_MUCL42920 | rna-NM_001183603.3_MUCL42920 | cds-NP_014827.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:679246-680433:+ | gene-YOR184W_NCIM3186 | rna-NM_001183603.3_NCIM3186 | cds-NP_014827.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:667101-668288:+ | gene-YOR184W_NCYC1407 | rna-NM_001183603.3_NCYC1407 | cds-NP_014827.3_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:665926-667113:+ | gene-YOR184W_PE2H3 | rna-NM_001183603.3_PE2H3 | cds-NP_014827.3_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:676303-677490:+ | gene-YOR184W_PE2H4 | rna-NM_001183603.3_PE2H4 | cds-NP_014827.3_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:679357-680544:+ | gene-YOR184W_S288C | rna-NM_001183603.3_S288C | cds-NP_014827.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:95922-97109:+ | gene-YOR184W_SA1 | rna-NM_001183603.3_SA1 | cds-NP_014827.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:656919-658106:+ | gene-YOR184W_ThermosaccDry | rna-NM_001183603.3_ThermosaccDry | cds-NP_014827.3_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:720955-722142:+ | gene-YOR184W_VR1 | rna-NM_001183603.3_VR1 | cds-NP_014827.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:390324-391511:+ | gene-YOR184W_ZTW1 | rna-NM_001183603.3_ZTW1 | cds-NP_014827.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:662542-663729:+ | gene-YOR184W_Sparadoxus | rna-NM_001183603.3_Sparadoxus | cds-NP_014827.3_Sparadoxus | 90.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |