Gene name: SEN54
Reference locus (S288C): YPL083C
Gene biotype: protein_coding
Description: Subunit of the tRNA splicing endonuclease; tRNA splicing endonuclease (Sen complex) is composed of Sen2p, Sen15p, Sen34p, and Sen54p; Sen complex also cleaves the CBP1 mRNA at the mitochondrial surface
Top 10 interactors (score): SEN34 (0.999); SEN2 (0.999); SEN15 (0.997); TRL1 (0.956); RPP1 (0.901); POP1 (0.9); POP5 (0.9); POP4 (0.9); MMS4 (0.9); MUS81 (0.9); RPR2 (0.9); POP7 (0.9); RPM2 (0.9); POP3 (0.9); POP6 (0.9); POP8 (0.9); MRPS18 (0.832); TPT1 (0.782); MRPL7 (0.763); RSM18 (0.722)
Homologues (species, bitscore): TSEN54 (Homo sapiens, 56.6); Tsen54 (Mus musculus, 60.8); tsen54 (Danio rerio, 62.4); tsen54 (Xenopus tropicalis, 61.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:374438-375838:- | gene-YPL083C_AKU4011 | rna-NM_001183897.1_AKU4011 | cds-NP_015242.1_AKU4011 | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:580124-581524:- | gene-YPL083C_BG1 | rna-NM_001183897.1_BG1 | cds-NP_015242.1_BG1 | 99.7 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:450761-452161:- | gene-YPL083C_Bruggeman | rna-NM_001183897.1_Bruggeman | cds-NP_015242.1_Bruggeman | 99.5 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:491110-492513:- | gene-YPL083C_CAT1 | rna-NM_001183897.1_CAT1 | cds-NP_015242.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:378505-379905:- | gene-YPL083C_CBS1585 | rna-NM_001183897.1_CBS1585 | cds-NP_015242.1_CBS1585 | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:393060-394460:- | gene-YPL083C_CBS436 | rna-NM_001183897.1_CBS436 | cds-NP_015242.1_CBS436 | 99.7 | 99.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:382699-384099:- | gene-YPL083C_CBS6412 | rna-NM_001183897.1_CBS6412 | cds-NP_015242.1_CBS6412 | 99.4 | 99.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:375053-376456:- | gene-YPL083C_CBS6413 | rna-NM_001183897.1_CBS6413 | cds-NP_015242.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:396674-398077:- | gene-YPL083C_CENPK1137D | rna-NM_001183897.1_CENPK1137D | cds-NP_015242.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:372805-374205:- | gene-YPL083C_EthanolRed | rna-NM_001183897.1_EthanolRed | cds-NP_015242.1_EthanolRed | 99.4 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:380635-382035:- | gene-YPL083C_FaliES1 | rna-NM_001183897.1_FaliES1 | cds-NP_015242.1_FaliES1 | 99.4 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000350.1:9203-10604:+ | gene-YPL083C_JAY291 | rna-NM_001183897.1_JAY291 | cds-NP_015242.1_JAY291 | 99.6 | 99.7 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:391590-392990:- | gene-YPL083C_MUCL30387 | rna-NM_001183897.1_MUCL30387 | cds-NP_015242.1_MUCL30387 | 99.5 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:390393-391793:- | gene-YPL083C_MUCL30388 | rna-NM_001183897.1_MUCL30388 | cds-NP_015242.1_MUCL30388 | 99.5 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:371834-373234:- | gene-YPL083C_MUCL39482 | rna-NM_001183897.1_MUCL39482 | cds-NP_015242.1_MUCL39482 | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:429699-431099:- | gene-YPL083C_MUCL42920 | rna-NM_001183897.1_MUCL42920 | cds-NP_015242.1_MUCL42920 | 99.7 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:396685-398088:- | gene-YPL083C_NCIM3186 | rna-NM_001183897.1_NCIM3186 | cds-NP_015242.1_NCIM3186 | 86.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:378445-379845:- | gene-YPL083C_NCYC1407 | rna-NM_001183897.1_NCYC1407 | cds-NP_015242.1_NCYC1407 | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:385719-387119:- | gene-YPL083C_PE2H3 | rna-NM_001183897.1_PE2H3 | cds-NP_015242.1_PE2H3 | 99.7 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:385342-386742:- | gene-YPL083C_PE2H4 | rna-NM_001183897.1_PE2H4 | cds-NP_015242.1_PE2H4 | 99.7 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:396702-398105:- | gene-YPL083C_S288C | rna-NM_001183897.1_S288C | cds-NP_015242.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000057.1:18817-20217:- | gene-YPL083C_SA1 | rna-NM_001183897.1_SA1 | cds-NP_015242.1_SA1 | 99.7 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:380435-381835:- | gene-YPL083C_ThermosaccDry | rna-NM_001183897.1_ThermosaccDry | cds-NP_015242.1_ThermosaccDry | 99.4 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:395428-396828:- | gene-YPL083C_VR1 | rna-NM_001183897.1_VR1 | cds-NP_015242.1_VR1 | 99.7 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:379742-381144:- | gene-YPL083C_ZTW1 | rna-NM_001183897.1_ZTW1 | cds-NP_015242.1_ZTW1 | 99.5 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:381358-382764:- | gene-YPL083C_Sparadoxus | rna-NM_001183897.1_Sparadoxus | cds-NP_015242.1_Sparadoxus | 85.1 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |