Gene name: SEN34
Reference locus (S288C): YAR008W
Gene biotype: protein_coding
Description: Subunit of the tRNA splicing endonuclease; tRNA splicing endonuclease (Sen complex) is composed of Sen2p, Sen15p, Sen34p, and Sen54p; Sen complex also cleaves the CBP1 mRNA at the mitochondrial surface; Sen34p contains the active site for tRNA 3' splice site cleavage and has similarity to Sen2p and to Archaeal tRNA splicing endonuclease
Top 10 interactors (score): SEN2 (0.999); SEN54 (0.999); SEN15 (0.998); POP4 (0.966); POP1 (0.958); TRL1 (0.922); TPT1 (0.92); POP5 (0.909); POP8 (0.904); RPP1 (0.901); POP7 (0.9); POP3 (0.9); MUS81 (0.9); POP6 (0.9); RPM2 (0.9); MMS4 (0.9); RPR2 (0.9); MSR1 (0.887); PCH2 (0.771); TRM5 (0.698)
Homologues (species, bitscore): TSEN34 (Homo sapiens, 75.9); Tsen34 (Mus musculus, 81.3); tsen34 (Danio rerio, 85.1); tsen34 (Xenopus tropicalis, 95.1); CG33260 (Drosophila melanogaster, 54.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005295.1:144395-145222:+ | gene-YAR008W_AKU4011 | rna-NM_001178212.1_AKU4011 | cds-NP_009405.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000103.1:6855-7682:+ | gene-YAR008W_BG1 | rna-NM_001178212.1_BG1 | cds-NP_009405.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:159181-160008:+ | gene-YAR008W_Bruggeman | rna-NM_001178212.1_Bruggeman | cds-NP_009405.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005519.1:146034-146861:+ | gene-YAR008W_CAT1 | rna-NM_001178212.1_CAT1 | cds-NP_009405.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005359.1:157093-157920:+ | gene-YAR008W_CBS1585 | rna-NM_001178212.1_CBS1585 | cds-NP_009405.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005343.1:157407-158234:+ | gene-YAR008W_CBS436 | rna-NM_001178212.1_CBS436 | cds-NP_009405.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:769837-770664:+ | gene-YAR008W_CBS6412 | rna-NM_001178212.1_CBS6412 | cds-NP_009405.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005311.1:155361-156188:+ | gene-YAR008W_CBS6413 | rna-NM_001178212.1_CBS6413 | cds-NP_009405.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001522.1:158872-159699:+ | gene-YAR008W_CENPK1137D | rna-NM_001178212.1_CENPK1137D | cds-NP_009405.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005471.1:144951-145778:+ | gene-YAR008W_EthanolRed | rna-NM_001178212.1_EthanolRed | cds-NP_009405.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005535.1:160612-161439:+ | gene-YAR008W_FaliES1 | rna-NM_001178212.1_FaliES1 | cds-NP_009405.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000248.1:17981-18808:+ | gene-YAR008W_JAY291 | rna-NM_001178212.1_JAY291 | cds-NP_009405.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005407.1:160948-161775:+ | gene-YAR008W_MUCL30387 | rna-NM_001178212.1_MUCL30387 | cds-NP_009405.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005439.1:157599-158426:+ | gene-YAR008W_MUCL30388 | rna-NM_001178212.1_MUCL30388 | cds-NP_009405.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005279.1:156349-157176:+ | gene-YAR008W_MUCL39482 | rna-NM_001178212.1_MUCL39482 | cds-NP_009405.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:158748-159575:+ | gene-YAR008W_MUCL42920 | rna-NM_001178212.1_MUCL42920 | cds-NP_009405.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:158843-159670:+ | gene-YAR008W_NCIM3186 | rna-NM_001178212.1_NCIM3186 | cds-NP_009405.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005263.1:143759-144586:+ | gene-YAR008W_NCYC1407 | rna-NM_001178212.1_NCYC1407 | cds-NP_009405.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:145680-146507:+ | gene-YAR008W_PE2H3 | rna-NM_001178212.1_PE2H3 | cds-NP_009405.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:145399-146226:+ | gene-YAR008W_PE2H4 | rna-NM_001178212.1_PE2H4 | cds-NP_009405.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:158966-159793:+ | gene-YAR008W_S288C | rna-NM_001178212.1_S288C | cds-NP_009405.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000100.1:17698-18525:+ | gene-YAR008W_SA1 | rna-NM_001178212.1_SA1 | cds-NP_009405.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005487.1:159617-160444:+ | gene-YAR008W_ThermosaccDry | rna-NM_001178212.1_ThermosaccDry | cds-NP_009405.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005455.1:164171-164998:+ | gene-YAR008W_VR1 | rna-NM_001178212.1_VR1 | cds-NP_009405.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000002.1:131440-132267:+ | gene-YAR008W_ZTW1 | rna-NM_001178212.1_ZTW1 | cds-NP_009405.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047487.1:149066-149887:+ | gene-YAR008W_Sparadoxus | rna-NM_001178212.1_Sparadoxus | cds-NP_009405.1_Sparadoxus | 91.0 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |