Gene name: SEN15
Reference locus (S288C): YMR059W
Gene biotype: protein_coding
Description: Subunit of the tRNA splicing endonuclease; tRNA splicing endonuclease (Sen complex) is composed of Sen2p, Sen15p, Sen34p, and Sen54p; Sen complex also cleaves the CBP1 mRNA at the mitochondrial surface
Top 10 interactors (score): SEN2 (0.998); SEN34 (0.998); SEN54 (0.997); RPR2 (0.973); POP6 (0.968); POP4 (0.968); POP1 (0.963); TRL1 (0.92); POP8 (0.9); RPP1 (0.9); MUS81 (0.9); POP3 (0.9); RPM2 (0.9); MMS4 (0.9); POP7 (0.9); POP5 (0.9); TPT1 (0.78); OLA1 (0.701); NUP116 (0.695); RRP4 (0.695)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:428812-429198:+ | gene-YMR059W_AKU4011 | rna-NM_001182557.1_AKU4011 | cds-NP_013775.2_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:113584-113970:- | gene-YMR059W_BG1 | rna-NM_001182557.1_BG1 | cds-NP_013775.2_BG1 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:370980-371366:+ | gene-YMR059W_Bruggeman | rna-NM_001182557.1_Bruggeman | cds-NP_013775.2_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:371319-371705:+ | gene-YMR059W_CAT1 | rna-NM_001182557.1_CAT1 | cds-NP_013775.2_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:361755-362141:+ | gene-YMR059W_CBS1585 | rna-NM_001182557.1_CBS1585 | cds-NP_013775.2_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:367312-367698:+ | gene-YMR059W_CBS436 | rna-NM_001182557.1_CBS436 | cds-NP_013775.2_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:475155-475541:+ | gene-YMR059W_CBS6412 | rna-NM_001182557.1_CBS6412 | cds-NP_013775.2_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:361012-361398:+ | gene-YMR059W_CBS6413 | rna-NM_001182557.1_CBS6413 | cds-NP_013775.2_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:385214-385600:+ | gene-YMR059W_CENPK1137D | rna-NM_001182557.1_CENPK1137D | cds-NP_013775.2_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:361607-361993:+ | gene-YMR059W_EthanolRed | rna-NM_001182557.1_EthanolRed | cds-NP_013775.2_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:364776-365162:+ | gene-YMR059W_FaliES1 | rna-NM_001182557.1_FaliES1 | cds-NP_013775.2_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:71780-72166:- | gene-YMR059W_JAY291 | rna-NM_001182557.1_JAY291 | cds-NP_013775.2_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:366722-367108:+ | gene-YMR059W_MUCL30387 | rna-NM_001182557.1_MUCL30387 | cds-NP_013775.2_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:371391-371777:+ | gene-YMR059W_MUCL30388 | rna-NM_001182557.1_MUCL30388 | cds-NP_013775.2_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:362043-362429:+ | gene-YMR059W_MUCL39482 | rna-NM_001182557.1_MUCL39482 | cds-NP_013775.2_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:368702-369088:+ | gene-YMR059W_MUCL42920 | rna-NM_001182557.1_MUCL42920 | cds-NP_013775.2_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:391053-391439:+ | gene-YMR059W_NCIM3186 | rna-NM_001182557.1_NCIM3186 | cds-NP_013775.2_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:361955-362341:+ | gene-YMR059W_NCYC1407 | rna-NM_001182557.1_NCYC1407 | cds-NP_013775.2_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:367909-368295:+ | gene-YMR059W_PE2H3 | rna-NM_001182557.1_PE2H3 | cds-NP_013775.2_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:374004-374390:+ | gene-YMR059W_PE2H4 | rna-NM_001182557.1_PE2H4 | cds-NP_013775.2_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:391099-391485:+ | gene-YMR059W_S288C | rna-NM_001182557.1_S288C | cds-NP_013775.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:158660-159046:- | gene-YMR059W_SA1 | rna-NM_001182557.1_SA1 | cds-NP_013775.2_SA1 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:362579-362965:+ | gene-YMR059W_ThermosaccDry | rna-NM_001182557.1_ThermosaccDry | cds-NP_013775.2_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:373474-373860:+ | gene-YMR059W_VR1 | rna-NM_001182557.1_VR1 | cds-NP_013775.2_VR1 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:340859-341245:+ | gene-YMR059W_ZTW1 | rna-NM_001182557.1_ZTW1 | cds-NP_013775.2_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:374455-374841:+ | gene-YMR059W_Sparadoxus | rna-NM_001182557.1_Sparadoxus | cds-NP_013775.2_Sparadoxus | 88.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |