Gene name: SEG2
Reference locus (S288C): YKL105C
Gene biotype: protein_coding
Description: Eisosome protein SEG2; Eisosome component; likely plays only a minor role in eisosome assembly; shown to interact with Seg1p by affinity purification and mass spec; SWAT-GFP and mCherry fusion proteins localize to the cell periphery; similar to A. gossypii SEG gene which is important for stabilizing eisosomes; SEG2 has a paralog, SEG1, that arose from the whole genome duplication
Top 10 interactors (score): YGR130C (0.814); YPR097W (0.813); EIS1 (0.813); PIL1 (0.761); MSC3 (0.719); VID27 (0.712); KRI1 (0.693); INP51 (0.631); SEG1 (0.601); CWC23 (0.574); YOR238W (0.569); IRS4 (0.568); RQC1 (0.562); SFB3 (0.526); LSP1 (0.482); TGS1 (0.482); FUS1 (0.459); BBC1 (0.454); PBI1 (0.45); SWH1 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:225737-229135:- | gene-YKL105C_AKU4011 | rna-NM_001179671.1_AKU4011 | cds-NP_012817.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:202867-206253:- | gene-YKL105C_BG1 | rna-NM_001179671.1_BG1 | cds-NP_012817.1_BG1 | 98.8 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:243912-247310:- | gene-YKL105C_Bruggeman | rna-NM_001179671.1_Bruggeman | cds-NP_012817.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:238714-242100:- | gene-YKL105C_CAT1 | rna-NM_001179671.1_CAT1 | cds-NP_012817.1_CAT1 | 98.8 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:237976-241374:- | gene-YKL105C_CBS1585 | rna-NM_001179671.1_CBS1585 | cds-NP_012817.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:236580-239966:- | gene-YKL105C_CBS436 | rna-NM_001179671.1_CBS436 | cds-NP_012817.1_CBS436 | 98.8 | 99.6 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:222608-226006:- | gene-YKL105C_CBS6412 | rna-NM_001179671.1_CBS6412 | cds-NP_012817.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:238433-241831:- | gene-YKL105C_CBS6413 | rna-NM_001179671.1_CBS6413 | cds-NP_012817.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:238826-242225:- | gene-YKL105C_CENPK1137D | rna-NM_001179671.1_CENPK1137D | cds-NP_012817.1_CENPK1137D | 99.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:236428-239826:- | gene-YKL105C_EthanolRed | rna-NM_001179671.1_EthanolRed | cds-NP_012817.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:237241-240639:- | gene-YKL105C_FaliES1 | rna-NM_001179671.1_FaliES1 | cds-NP_012817.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000357.1:59581-62967:- | gene-YKL105C_JAY291 | rna-NM_001179671.1_JAY291 | cds-NP_012817.1_JAY291 | 98.8 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:245718-249104:- | gene-YKL105C_MUCL30387 | rna-NM_001179671.1_MUCL30387 | cds-NP_012817.1_MUCL30387 | 99.2 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:240117-243503:- | gene-YKL105C_MUCL30388 | rna-NM_001179671.1_MUCL30388 | cds-NP_012817.1_MUCL30388 | 99.1 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:237764-241162:- | gene-YKL105C_MUCL39482 | rna-NM_001179671.1_MUCL39482 | cds-NP_012817.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:242161-245547:- | gene-YKL105C_MUCL42920 | rna-NM_001179671.1_MUCL42920 | cds-NP_012817.1_MUCL42920 | 98.8 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:239174-242572:- | gene-YKL105C_NCIM3186 | rna-NM_001179671.1_NCIM3186 | cds-NP_012817.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:237955-241353:- | gene-YKL105C_NCYC1407 | rna-NM_001179671.1_NCYC1407 | cds-NP_012817.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:245055-248441:- | gene-YKL105C_PE2H3 | rna-NM_001179671.1_PE2H3 | cds-NP_012817.1_PE2H3 | 98.8 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:241341-244727:- | gene-YKL105C_PE2H4 | rna-NM_001179671.1_PE2H4 | cds-NP_012817.1_PE2H4 | 98.8 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:239185-242583:- | gene-YKL105C_S288C | rna-NM_001179671.1_S288C | cds-NP_012817.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:155303-158689:- | gene-YKL105C_SA1 | rna-NM_001179671.1_SA1 | cds-NP_012817.1_SA1 | 98.8 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:237946-241344:- | gene-YKL105C_ThermosaccDry | rna-NM_001179671.1_ThermosaccDry | cds-NP_012817.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:237315-240701:- | gene-YKL105C_VR1 | rna-NM_001179671.1_VR1 | cds-NP_012817.1_VR1 | 98.8 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:236498-239908:- | gene-YKL105C_ZTW1 | rna-NM_001179671.1_ZTW1 | cds-NP_012817.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:253525-256887:- | gene-YKL105C_Sparadoxus | rna-NM_001179671.1_Sparadoxus | cds-NP_012817.1_Sparadoxus | 80.0 | 98.4 | Verified | 1 | 1 | 0 | False | False | False | True | False |