Gene name: SEG1
Reference locus (S288C): YMR086W
Gene biotype: protein_coding
Description: Eisosome protein SEG1; Component of eisosome required for proper eisosome assembly; precedes Pil1p/Lsp1p during eisosome formation, controls eisosome length and shape; diffusely distributed, forms heterogeneous patches at plasma membrane in small buds, also found in medium and large buds; expression repressed by cAMP; similar to A. gossypii SEG gene and to S. pombe Sle1p, important for generating eisosomes; SEG1 has a paralog, SEG2, that arose from the whole genome duplication
Top 10 interactors (score): PIL1 (0.967); EIS1 (0.938); LSP1 (0.934); MSC3 (0.896); YGR130C (0.878); NCE102 (0.753); INP51 (0.607); SEG2 (0.601); SUR7 (0.574); PKH1 (0.574); SLM1 (0.573); BSC4 (0.569); PKH2 (0.568); YHR033W (0.551); KRI1 (0.526); IMP3 (0.489); GVP36 (0.483); APE2 (0.481); DCS2 (0.453); TMA19 (0.452)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:477146-480028:+ | gene-YMR086W_AKU4011 | rna-NM_001182586.1_AKU4011 | cds-NP_013803.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:62986-65868:- | gene-YMR086W_BG1 | rna-NM_001182586.1_BG1 | cds-NP_013803.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:419324-422206:+ | gene-YMR086W_Bruggeman | rna-NM_001182586.1_Bruggeman | cds-NP_013803.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:419650-422532:+ | gene-YMR086W_CAT1 | rna-NM_001182586.1_CAT1 | cds-NP_013803.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:410086-412968:+ | gene-YMR086W_CBS1585 | rna-NM_001182586.1_CBS1585 | cds-NP_013803.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:415410-418292:+ | gene-YMR086W_CBS436 | rna-NM_001182586.1_CBS436 | cds-NP_013803.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:523161-526043:+ | gene-YMR086W_CBS6412 | rna-NM_001182586.1_CBS6412 | cds-NP_013803.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:409343-412225:+ | gene-YMR086W_CBS6413 | rna-NM_001182586.1_CBS6413 | cds-NP_013803.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:433312-436194:+ | gene-YMR086W_CENPK1137D | rna-NM_001182586.1_CENPK1137D | cds-NP_013803.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:409976-412858:+ | gene-YMR086W_EthanolRed | rna-NM_001182586.1_EthanolRed | cds-NP_013803.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:413142-416024:+ | gene-YMR086W_FaliES1 | rna-NM_001182586.1_FaliES1 | cds-NP_013803.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:21187-24069:- | gene-YMR086W_JAY291 | rna-NM_001182586.1_JAY291 | cds-NP_013803.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:415584-418466:+ | gene-YMR086W_MUCL30387 | rna-NM_001182586.1_MUCL30387 | cds-NP_013803.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:420486-423368:+ | gene-YMR086W_MUCL30388 | rna-NM_001182586.1_MUCL30388 | cds-NP_013803.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:410374-413256:+ | gene-YMR086W_MUCL39482 | rna-NM_001182586.1_MUCL39482 | cds-NP_013803.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:417063-419945:+ | gene-YMR086W_MUCL42920 | rna-NM_001182586.1_MUCL42920 | cds-NP_013803.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:439162-442044:+ | gene-YMR086W_NCIM3186 | rna-NM_001182586.1_NCIM3186 | cds-NP_013803.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:410290-413172:+ | gene-YMR086W_NCYC1407 | rna-NM_001182586.1_NCYC1407 | cds-NP_013803.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:416010-418892:+ | gene-YMR086W_PE2H3 | rna-NM_001182586.1_PE2H3 | cds-NP_013803.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:422105-424987:+ | gene-YMR086W_PE2H4 | rna-NM_001182586.1_PE2H4 | cds-NP_013803.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:439208-442090:+ | gene-YMR086W_S288C | rna-NM_001182586.1_S288C | cds-NP_013803.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:108077-110959:- | gene-YMR086W_SA1 | rna-NM_001182586.1_SA1 | cds-NP_013803.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:410945-413827:+ | gene-YMR086W_ThermosaccDry | rna-NM_001182586.1_ThermosaccDry | cds-NP_013803.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:422596-425478:+ | gene-YMR086W_VR1 | rna-NM_001182586.1_VR1 | cds-NP_013803.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:387217-390099:+ | gene-YMR086W_ZTW1 | rna-NM_001182586.1_ZTW1 | cds-NP_013803.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:423715-426594:+ | gene-YMR086W_Sparadoxus | rna-NM_001182586.1_Sparadoxus | cds-NP_013803.1_Sparadoxus | 85.3 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |