Gene name: SED5
Reference locus (S288C): YLR026C
Gene biotype: protein_coding
Description: Integral membrane protein SED5; cis-Golgi t-SNARE syntaxin; required for vesicular transport between the ER and the Golgi complex; binds at least 9 SNARE proteins
Top 10 interactors (score): BET1 (0.999); UFE1 (0.999); SLY1 (0.999); GOS1 (0.999); SEC22 (0.999); SFT1 (0.999); VTI1 (0.999); BOS1 (0.999); SEC17 (0.999); YKT6 (0.999); TLG1 (0.998); YPT1 (0.995); TLG2 (0.994); USE1 (0.993); SNC2 (0.993); SEC24 (0.992); SEC9 (0.992); SSO1 (0.992); VPS45 (0.991); SEC23 (0.991)
Homologues (species, bitscore): STX5 (Homo sapiens, 148.7); Stx5a (Mus musculus, 158.3); stx5a (Danio rerio, 172.6); stx5 (Xenopus tropicalis, 168.3); Syx5 (Drosophila melanogaster, 161.0); syx-5 (Caenorhabditis elegans, 136.3); SYP32 (Arabidopsis thaliana, 136.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:183385-184407:- | gene-YLR026C_AKU4011 | rna-NM_001181913.1_AKU4011 | cds-NP_013126.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:146659-147681:- | gene-YLR026C_BG1 | rna-NM_001181913.1_BG1 | cds-NP_013126.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:193781-194803:- | gene-YLR026C_Bruggeman | rna-NM_001181913.1_Bruggeman | cds-NP_013126.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:194104-195126:- | gene-YLR026C_CAT1 | rna-NM_001181913.1_CAT1 | cds-NP_013126.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:191010-192032:- | gene-YLR026C_CBS1585 | rna-NM_001181913.1_CBS1585 | cds-NP_013126.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:181644-182666:- | gene-YLR026C_CBS436 | rna-NM_001181913.1_CBS436 | cds-NP_013126.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:189422-190444:- | gene-YLR026C_CBS6412 | rna-NM_001181913.1_CBS6412 | cds-NP_013126.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:191274-192296:- | gene-YLR026C_CBS6413 | rna-NM_001181913.1_CBS6413 | cds-NP_013126.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:180697-181719:- | gene-YLR026C_CENPK1137D | rna-NM_001181913.1_CENPK1137D | cds-NP_013126.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:183398-184420:- | gene-YLR026C_EthanolRed | rna-NM_001181913.1_EthanolRed | cds-NP_013126.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:182969-183991:- | gene-YLR026C_FaliES1 | rna-NM_001181913.1_FaliES1 | cds-NP_013126.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000431.1:27163-28185:- | gene-YLR026C_JAY291 | rna-NM_001181913.1_JAY291 | cds-NP_013126.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:191129-192151:- | gene-YLR026C_MUCL30387 | rna-NM_001181913.1_MUCL30387 | cds-NP_013126.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:197751-198773:- | gene-YLR026C_MUCL30388 | rna-NM_001181913.1_MUCL30388 | cds-NP_013126.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:191505-192527:- | gene-YLR026C_MUCL39482 | rna-NM_001181913.1_MUCL39482 | cds-NP_013126.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:191408-192430:- | gene-YLR026C_MUCL42920 | rna-NM_001181913.1_MUCL42920 | cds-NP_013126.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:195424-196446:- | gene-YLR026C_NCIM3186 | rna-NM_001181913.1_NCIM3186 | cds-NP_013126.1_NCIM3186 | 97.0 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:183124-184146:- | gene-YLR026C_NCYC1407 | rna-NM_001181913.1_NCYC1407 | cds-NP_013126.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:189440-190462:- | gene-YLR026C_PE2H3 | rna-NM_001181913.1_PE2H3 | cds-NP_013126.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:189181-190203:- | gene-YLR026C_PE2H4 | rna-NM_001181913.1_PE2H4 | cds-NP_013126.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:195450-196472:- | gene-YLR026C_S288C | rna-NM_001181913.1_S288C | cds-NP_013126.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000046.1:27298-28320:- | gene-YLR026C_SA1 | rna-NM_001181913.1_SA1 | cds-NP_013126.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:183474-184496:- | gene-YLR026C_ThermosaccDry | rna-NM_001181913.1_ThermosaccDry | cds-NP_013126.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:196889-197911:- | gene-YLR026C_VR1 | rna-NM_001181913.1_VR1 | cds-NP_013126.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:182835-183857:- | gene-YLR026C_ZTW1 | rna-NM_001181913.1_ZTW1 | cds-NP_013126.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:191610-192632:- | gene-YLR026C_Sparadoxus | rna-NM_001181913.1_Sparadoxus | cds-NP_013126.1_Sparadoxus | 90.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |