Gene name: SED1
Reference locus (S288C): YDR077W
Gene biotype: protein_coding
Description: Cell wall protein SED1; Major stress-induced structural GPI-cell wall glycoprotein; associates with translating ribosomes, possible role in mitochondrial genome maintenance; ORF contains two distinct variable minisatellites; SED1 has a paralog, SPI1, that arose from the whole genome duplication
Top 10 interactors (score): HSP150 (0.943); SPI1 (0.93); CWP2 (0.917); CCW12 (0.863); SAG1 (0.813); CWP1 (0.807); PST1 (0.783); CCW14 (0.751); AGA1 (0.744); TOS6 (0.744); EXG1 (0.726); DSE2 (0.716); SCW11 (0.715); PIR3 (0.7); TIR1 (0.698); FIG2 (0.695); SCW4 (0.628); PIR1 (0.624); FLO1 (0.618); GAS1 (0.618)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:578321-579361:+ | gene-YDR077W_AKU4011 | rna-NM_001180385.3_AKU4011 | cds-NP_010362.3_AKU4011 | 96.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:545976-547037:- | gene-YDR077W_BG1 | rna-NM_001180385.3_BG1 | cds-NP_010362.3_BG1 | 77.2 | 89.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:610618-611592:+ | gene-YDR077W_Bruggeman | rna-NM_001180385.3_Bruggeman | cds-NP_010362.3_Bruggeman | 95.0 | 95.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:594197-595237:+ | gene-YDR077W_CAT1 | rna-NM_001180385.3_CAT1 | cds-NP_010362.3_CAT1 | 97.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:569275-570377:+ | gene-YDR077W_CBS1585 | rna-NM_001180385.3_CBS1585 | cds-NP_010362.3_CBS1585 | 88.7 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:594434-595408:+ | gene-YDR077W_CBS436 | rna-NM_001180385.3_CBS436 | cds-NP_010362.3_CBS436 | 95.1 | 95.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:565686-566792:+ | gene-YDR077W_CBS6412 | rna-NM_001180385.3_CBS6412 | cds-NP_010362.3_CBS6412 | 90.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:594351-595325:+ | gene-YDR077W_CBS6413 | rna-NM_001180385.3_CBS6413 | cds-NP_010362.3_CBS6413 | 95.2 | 95.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:599804-600820:+ | gene-YDR077W_CENPK1137D | rna-NM_001180385.3_CENPK1137D | cds-NP_010362.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:580177-581151:+ | gene-YDR077W_EthanolRed | rna-NM_001180385.3_EthanolRed | cds-NP_010362.3_EthanolRed | 95.2 | 95.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:586917-587945:+ | gene-YDR077W_FaliES1 | rna-NM_001180385.3_FaliES1 | cds-NP_010362.3_FaliES1 | 95.5 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000358.1:43315-44223:- | gene-YDR077W_JAY291 | rna-NM_001180385.3_JAY291 | cds-NP_010362.3_JAY291 | 88.7 | 89.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:595301-596209:+ | gene-YDR077W_MUCL30387 | rna-NM_001180385.3_MUCL30387 | cds-NP_010362.3_MUCL30387 | 88.5 | 89.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:585700-586521:+ | gene-YDR077W_MUCL30388 | rna-NM_001180385.3_MUCL30388 | cds-NP_010362.3_MUCL30388 | 80.2 | 80.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:570641-571747:+ | gene-YDR077W_MUCL39482 | rna-NM_001180385.3_MUCL39482 | cds-NP_010362.3_MUCL39482 | 90.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:501355-502329:+ | gene-YDR077W_MUCL42920 | rna-NM_001180385.3_MUCL42920 | cds-NP_010362.3_MUCL42920 | 95.1 | 95.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:600716-601732:+ | gene-YDR077W_NCIM3186 | rna-NM_001180385.3_NCIM3186 | cds-NP_010362.3_NCIM3186 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:569566-570672:+ | gene-YDR077W_NCYC1407 | rna-NM_001180385.3_NCYC1407 | cds-NP_010362.3_NCYC1407 | 90.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:589225-590133:+ | gene-YDR077W_PE2H3 | rna-NM_001180385.3_PE2H3 | cds-NP_010362.3_PE2H3 | 88.7 | 89.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:588530-589438:+ | gene-YDR077W_PE2H4 | rna-NM_001180385.3_PE2H4 | cds-NP_010362.3_PE2H4 | 88.7 | 89.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:600793-601809:+ | gene-YDR077W_S288C | rna-NM_001180385.3_S288C | cds-NP_010362.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:43522-44715:- | gene-YDR077W_SA1 | rna-NM_001180385.3_SA1 | cds-NP_010362.3_SA1 | 84.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:586294-587476:+ | gene-YDR077W_ThermosaccDry | rna-NM_001180385.3_ThermosaccDry | cds-NP_010362.3_ThermosaccDry | 83.5 | 98.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:599021-600037:+ | gene-YDR077W_VR1 | rna-NM_001180385.3_VR1 | cds-NP_010362.3_VR1 | 94.7 | 97.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:583921-585048:+ | gene-YDR077W_ZTW1 | rna-NM_001180385.3_ZTW1 | cds-NP_010362.3_ZTW1 | 82.8 | 95.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:588761-589708:+ | gene-YDR077W_Sparadoxus | rna-NM_001180385.3_Sparadoxus | cds-NP_010362.3_Sparadoxus | 83.3 | 92.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |