Gene name: SEC9
Reference locus (S288C): YGR009C
Gene biotype: protein_coding
Description: t-SNARE protein required for secretory vesicle-plasma membrane fusion; similar to but not functionally redundant with Spo20p; interacts non-exocyst bound Sec6p; SNAP-25 homolog
Top 10 interactors (score): SSO2 (0.999); SEC4 (0.999); SEC1 (0.999); SNC2 (0.999); SNC1 (0.999); SSO1 (0.999); SEC17 (0.998); SRO7 (0.998); SEC22 (0.998); SEC6 (0.998); YKT6 (0.995); MSO1 (0.994); NYV1 (0.993); VAM3 (0.993); SED5 (0.992); SEC15 (0.989); UFE1 (0.988); SEC18 (0.985); BOS1 (0.985); SEC8 (0.982)
Homologues (species, bitscore): Snap23 (Mus musculus, 54.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:511095-513050:- | gene-YGR009C_AKU4011 | rna-NM_001181138.3_AKU4011 | cds-NP_011523.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000060.1:63063-65018:+ | gene-YGR009C_BG1 | rna-NM_001181138.3_BG1 | cds-NP_011523.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:512074-514029:- | gene-YGR009C_Bruggeman | rna-NM_001181138.3_Bruggeman | cds-NP_011523.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:510853-512808:- | gene-YGR009C_CAT1 | rna-NM_001181138.3_CAT1 | cds-NP_011523.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:512588-514543:- | gene-YGR009C_CBS1585 | rna-NM_001181138.3_CBS1585 | cds-NP_011523.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:506947-508902:- | gene-YGR009C_CBS436 | rna-NM_001181138.3_CBS436 | cds-NP_011523.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:505185-507140:- | gene-YGR009C_CBS6412 | rna-NM_001181138.3_CBS6412 | cds-NP_011523.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:509264-511219:- | gene-YGR009C_CBS6413 | rna-NM_001181138.3_CBS6413 | cds-NP_011523.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:508865-510820:- | gene-YGR009C_CENPK1137D | rna-NM_001181138.3_CENPK1137D | cds-NP_011523.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:499461-501416:- | gene-YGR009C_EthanolRed | rna-NM_001181138.3_EthanolRed | cds-NP_011523.3_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:502711-504666:- | gene-YGR009C_FaliES1 | rna-NM_001181138.3_FaliES1 | cds-NP_011523.3_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000020.1:41346-43301:- | gene-YGR009C_JAY291 | rna-NM_001181138.3_JAY291 | cds-NP_011523.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:509300-511255:- | gene-YGR009C_MUCL30387 | rna-NM_001181138.3_MUCL30387 | cds-NP_011523.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:511858-513813:- | gene-YGR009C_MUCL30388 | rna-NM_001181138.3_MUCL30388 | cds-NP_011523.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:508407-510362:- | gene-YGR009C_MUCL39482 | rna-NM_001181138.3_MUCL39482 | cds-NP_011523.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:517834-519789:- | gene-YGR009C_MUCL42920 | rna-NM_001181138.3_MUCL42920 | cds-NP_011523.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:509047-511002:- | gene-YGR009C_NCIM3186 | rna-NM_001181138.3_NCIM3186 | cds-NP_011523.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:502425-504380:- | gene-YGR009C_NCYC1407 | rna-NM_001181138.3_NCYC1407 | cds-NP_011523.3_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:505114-507069:- | gene-YGR009C_PE2H3 | rna-NM_001181138.3_PE2H3 | cds-NP_011523.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:510164-512119:- | gene-YGR009C_PE2H4 | rna-NM_001181138.3_PE2H4 | cds-NP_011523.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:509047-511002:- | gene-YGR009C_S288C | rna-NM_001181138.3_S288C | cds-NP_011523.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000021.1:44598-46553:+ | gene-YGR009C_SA1 | rna-NM_001181138.3_SA1 | cds-NP_011523.3_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:522037-523992:- | gene-YGR009C_ThermosaccDry | rna-NM_001181138.3_ThermosaccDry | cds-NP_011523.3_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:612332-614287:- | gene-YGR009C_VR1 | rna-NM_001181138.3_VR1 | cds-NP_011523.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:500635-502590:- | gene-YGR009C_ZTW1 | rna-NM_001181138.3_ZTW1 | cds-NP_011523.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:510131-512089:- | gene-YGR009C_Sparadoxus | rna-NM_001181138.3_Sparadoxus | cds-NP_011523.3_Sparadoxus | 89.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |