Gene name: SEC7
Reference locus (S288C): YDR170C
Gene biotype: protein_coding
Description: Protein transport protein SEC7; Guanine nucleotide exchange factor (GEF) for ADP ribosylation factors; involved in proliferation of the Golgi, intra-Golgi transport and ER-to-Golgi transport; found in the cytoplasm and on Golgi-associated coated vesicles
Top 10 interactors (score): ARF1 (0.999); ARL1 (0.994); YPT31 (0.985); YPT1 (0.984); ARF2 (0.982); PIK1 (0.977); ARF3 (0.976); SEC26 (0.966); GEA2 (0.963); GEA1 (0.963); DNF1 (0.94); YPT32 (0.93); CHC1 (0.928); SCC2 (0.916); AGE2 (0.91); SEC23 (0.905); CDC39 (0.904); CHS5 (0.898); SEC21 (0.897); KEX2 (0.897)
Homologues (species, bitscore): ARFGEF2 (Homo sapiens, 765.8); Arfgef2 (Mus musculus, 760.4); arfgef1 (Danio rerio, 764.6); arfgef2 (Xenopus tropicalis, 718.4); Sec71 (Drosophila melanogaster, 733.0); agef-1 (Caenorhabditis elegans, 648.7); EDA10 (Arabidopsis thaliana, 606.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:767491-773499:- | gene-YDR170C_AKU4011 | rna-NM_001180477.3_AKU4011 | cds-NP_010454.3_AKU4011 | 99.3 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:353209-359199:+ | gene-YDR170C_BG1 | rna-NM_001180477.3_BG1 | cds-NP_010454.3_BG1 | 99.0 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:798988-805020:- | gene-YDR170C_Bruggeman | rna-NM_001180477.3_Bruggeman | cds-NP_010454.3_Bruggeman | 99.6 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:786262-792273:- | gene-YDR170C_CAT1 | rna-NM_001180477.3_CAT1 | cds-NP_010454.3_CAT1 | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:757859-763867:- | gene-YDR170C_CBS1585 | rna-NM_001180477.3_CBS1585 | cds-NP_010454.3_CBS1585 | 99.3 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:784050-790088:- | gene-YDR170C_CBS436 | rna-NM_001180477.3_CBS436 | cds-NP_010454.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:753308-759316:- | gene-YDR170C_CBS6412 | rna-NM_001180477.3_CBS6412 | cds-NP_010454.3_CBS6412 | 99.3 | 99.6 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:781756-787776:- | gene-YDR170C_CBS6413 | rna-NM_001180477.3_CBS6413 | cds-NP_010454.3_CBS6413 | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:796855-802863:- | gene-YDR170C_CENPK1137D | rna-NM_001180477.3_CENPK1137D | cds-NP_010454.3_CENPK1137D | 99.1 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:767317-773346:- | gene-YDR170C_EthanolRed | rna-NM_001180477.3_EthanolRed | cds-NP_010454.3_EthanolRed | 99.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:775529-781558:- | gene-YDR170C_FaliES1 | rna-NM_001180477.3_FaliES1 | cds-NP_010454.3_FaliES1 | 99.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000119.1:713-6733:+ | gene-YDR170C_JAY291 | rna-NM_001180477.3_JAY291 | cds-NP_010454.3_JAY291 | 99.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:784366-790398:- | gene-YDR170C_MUCL30387 | rna-NM_001180477.3_MUCL30387 | cds-NP_010454.3_MUCL30387 | 99.6 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:772876-778908:- | gene-YDR170C_MUCL30388 | rna-NM_001180477.3_MUCL30388 | cds-NP_010454.3_MUCL30388 | 99.5 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:759286-765294:- | gene-YDR170C_MUCL39482 | rna-NM_001180477.3_MUCL39482 | cds-NP_010454.3_MUCL39482 | 99.3 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:697107-703097:- | gene-YDR170C_MUCL42920 | rna-NM_001180477.3_MUCL42920 | cds-NP_010454.3_MUCL42920 | 99.0 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:796116-802145:- | gene-YDR170C_NCIM3186 | rna-NM_001180477.3_NCIM3186 | cds-NP_010454.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:758691-764693:- | gene-YDR170C_NCYC1407 | rna-NM_001180477.3_NCYC1407 | cds-NP_010454.3_NCYC1407 | 99.2 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:777880-783918:- | gene-YDR170C_PE2H3 | rna-NM_001180477.3_PE2H3 | cds-NP_010454.3_PE2H3 | 98.9 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:777185-783223:- | gene-YDR170C_PE2H4 | rna-NM_001180477.3_PE2H4 | cds-NP_010454.3_PE2H4 | 98.9 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:796193-802222:- | gene-YDR170C_S288C | rna-NM_001180477.3_S288C | cds-NP_010454.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:143391-149429:- | gene-YDR170C_SA1 | rna-NM_001180477.3_SA1 | cds-NP_010454.3_SA1 | 98.9 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:773664-779693:- | gene-YDR170C_ThermosaccDry | rna-NM_001180477.3_ThermosaccDry | cds-NP_010454.3_ThermosaccDry | 99.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:788967-794957:- | gene-YDR170C_VR1 | rna-NM_001180477.3_VR1 | cds-NP_010454.3_VR1 | 99.0 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:36412-42425:- | gene-YDR170C_ZTW1 | rna-NM_001180477.3_ZTW1 | cds-NP_010454.3_ZTW1 | 99.3 | 99.7 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:779866-785877:- | gene-YDR170C_Sparadoxus | rna-NM_001180477.3_Sparadoxus | cds-NP_010454.3_Sparadoxus | 89.9 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |