Gene name: SEC65
Reference locus (S288C): YML105C
Gene biotype: protein_coding
Description: Subunit of the signal recognition particle (SRP); involved in protein targeting to the ER; interacts with Srp54p; homolog of mammalian SRP19
Top 10 interactors (score): SRP54 (0.999); SRP68 (0.999); SRP72 (0.999); SRP14 (0.999); SRP21 (0.997); SRP101 (0.997); SEC62 (0.954); RPL25 (0.902); RPS16A (0.9); SEC63 (0.895); RPL19A (0.89); SRP102 (0.885); SPC3 (0.882); RPS16B (0.875); RPL19B (0.873); NTG1 (0.858); RPL29 (0.855); RPS15 (0.853); RPL5 (0.852); RPL30 (0.85)
Homologues (species, bitscore): SRP19 (Homo sapiens, 50.8); Srp19 (Mus musculus, 51.2); srp19 (Xenopus tropicalis, 51.6); F37F2.2 (Caenorhabditis elegans, 63.2); AT1G48160 (Arabidopsis thaliana, 66.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:51589-52410:- | gene-YML105C_AKU4011 | rna-NM_001182467.1_AKU4011 | cds-NP_013602.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:423714-424535:+ | gene-YML105C_BG1 | rna-NM_001182467.1_BG1 | cds-NP_013602.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:57848-58669:- | gene-YML105C_Bruggeman | rna-NM_001182467.1_Bruggeman | cds-NP_013602.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:59402-60223:- | gene-YML105C_CAT1 | rna-NM_001182467.1_CAT1 | cds-NP_013602.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:51590-52411:- | gene-YML105C_CBS1585 | rna-NM_001182467.1_CBS1585 | cds-NP_013602.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:57586-58407:- | gene-YML105C_CBS436 | rna-NM_001182467.1_CBS436 | cds-NP_013602.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:52353-53174:- | gene-YML105C_CBS6412 | rna-NM_001182467.1_CBS6412 | cds-NP_013602.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:50817-51638:- | gene-YML105C_CBS6413 | rna-NM_001182467.1_CBS6413 | cds-NP_013602.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:52464-53285:- | gene-YML105C_CENPK1137D | rna-NM_001182467.1_CENPK1137D | cds-NP_013602.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:52099-52920:- | gene-YML105C_EthanolRed | rna-NM_001182467.1_EthanolRed | cds-NP_013602.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:52376-53197:- | gene-YML105C_FaliES1 | rna-NM_001182467.1_FaliES1 | cds-NP_013602.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000345.1:36984-37805:+ | gene-YML105C_JAY291 | rna-NM_001182467.1_JAY291 | cds-NP_013602.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:56298-57119:- | gene-YML105C_MUCL30387 | rna-NM_001182467.1_MUCL30387 | cds-NP_013602.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:59518-60339:- | gene-YML105C_MUCL30388 | rna-NM_001182467.1_MUCL30388 | cds-NP_013602.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:51605-52426:- | gene-YML105C_MUCL39482 | rna-NM_001182467.1_MUCL39482 | cds-NP_013602.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:55762-56583:- | gene-YML105C_MUCL42920 | rna-NM_001182467.1_MUCL42920 | cds-NP_013602.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:57820-58641:- | gene-YML105C_NCIM3186 | rna-NM_001182467.1_NCIM3186 | cds-NP_013602.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:52399-53220:- | gene-YML105C_NCYC1407 | rna-NM_001182467.1_NCYC1407 | cds-NP_013602.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:57837-58658:- | gene-YML105C_PE2H3 | rna-NM_001182467.1_PE2H3 | cds-NP_013602.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:57775-58596:- | gene-YML105C_PE2H4 | rna-NM_001182467.1_PE2H4 | cds-NP_013602.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:57866-58687:- | gene-YML105C_S288C | rna-NM_001182467.1_S288C | cds-NP_013602.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000054.1:49851-50672:- | gene-YML105C_SA1 | rna-NM_001182467.1_SA1 | cds-NP_013602.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:51673-52494:- | gene-YML105C_ThermosaccDry | rna-NM_001182467.1_ThermosaccDry | cds-NP_013602.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:56056-56877:- | gene-YML105C_VR1 | rna-NM_001182467.1_VR1 | cds-NP_013602.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:31159-31980:- | gene-YML105C_ZTW1 | rna-NM_001182467.1_ZTW1 | cds-NP_013602.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:62523-63344:- | gene-YML105C_Sparadoxus | rna-NM_001182467.1_Sparadoxus | cds-NP_013602.1_Sparadoxus | 91.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |