Gene name: SEC62
Reference locus (S288C): YPL094C
Gene biotype: protein_coding
Description: Translocation protein SEC62; Essential subunit of Sec63 complex; with Sec61 complex, Kar2p/BiP and Lhs1p forms a channel competent for SRP-dependent and post-translational SRP-independent protein targeting and import into the ER; cotranslationally N-acetylated by NatA; other members are Sec63p, Sec66p, and Sec72p
Top 10 interactors (score): SEC72 (0.999); SEC63 (0.999); SEC61 (0.999); SBH1 (0.999); SEC66 (0.999); SBH2 (0.998); SSS1 (0.998); KAR2 (0.994); CNE1 (0.97); PDI1 (0.955); SEC65 (0.954); SRP54 (0.936); BRR2 (0.927); SRP102 (0.901); ERV29 (0.901); DEG1 (0.896); LHS1 (0.891); SPC1 (0.882); YBR220C (0.863); SRP101 (0.853)
Homologues (species, bitscore): SEC62 (Homo sapiens, 95.5); Sec62 (Mus musculus, 96.3); sec62 (Danio rerio, 87.4); sec62 (Xenopus tropicalis, 93.6); Trp1 (Drosophila melanogaster, 85.1); C18E9.2 (Caenorhabditis elegans, 96.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:347481-348305:- | gene-YPL094C_AKU4011 | rna-NM_001183908.1_AKU4011 | cds-NP_015231.2_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:553235-554059:- | gene-YPL094C_BG1 | rna-NM_001183908.1_BG1 | cds-NP_015231.2_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:373487-374311:- | gene-YPL094C_Bruggeman | rna-NM_001183908.1_Bruggeman | cds-NP_015231.2_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:370951-371775:- | gene-YPL094C_CAT1 | rna-NM_001183908.1_CAT1 | cds-NP_015231.2_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:351554-352378:- | gene-YPL094C_CBS1585 | rna-NM_001183908.1_CBS1585 | cds-NP_015231.2_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:366226-367050:- | gene-YPL094C_CBS436 | rna-NM_001183908.1_CBS436 | cds-NP_015231.2_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:356223-357047:- | gene-YPL094C_CBS6412 | rna-NM_001183908.1_CBS6412 | cds-NP_015231.2_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:348190-349014:- | gene-YPL094C_CBS6413 | rna-NM_001183908.1_CBS6413 | cds-NP_015231.2_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:369787-370611:- | gene-YPL094C_CENPK1137D | rna-NM_001183908.1_CENPK1137D | cds-NP_015231.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:346173-346997:- | gene-YPL094C_EthanolRed | rna-NM_001183908.1_EthanolRed | cds-NP_015231.2_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:353765-354589:- | gene-YPL094C_FaliES1 | rna-NM_001183908.1_FaliES1 | cds-NP_015231.2_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:11229-12053:+ | gene-YPL094C_JAY291 | rna-NM_001183908.1_JAY291 | cds-NP_015231.2_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:364725-365549:- | gene-YPL094C_MUCL30387 | rna-NM_001183908.1_MUCL30387 | cds-NP_015231.2_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:589243-590067:- | gene-YPL094C_MUCL30388 | rna-NM_001183908.1_MUCL30388 | cds-NP_015231.2_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:344883-345707:- | gene-YPL094C_MUCL39482 | rna-NM_001183908.1_MUCL39482 | cds-NP_015231.2_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:402571-403395:- | gene-YPL094C_MUCL42920 | rna-NM_001183908.1_MUCL42920 | cds-NP_015231.2_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:369822-370646:- | gene-YPL094C_NCIM3186 | rna-NM_001183908.1_NCIM3186 | cds-NP_015231.2_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:351336-352160:- | gene-YPL094C_NCYC1407 | rna-NM_001183908.1_NCYC1407 | cds-NP_015231.2_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:358827-359651:- | gene-YPL094C_PE2H3 | rna-NM_001183908.1_PE2H3 | cds-NP_015231.2_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:358450-359274:- | gene-YPL094C_PE2H4 | rna-NM_001183908.1_PE2H4 | cds-NP_015231.2_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:369839-370663:- | gene-YPL094C_S288C | rna-NM_001183908.1_S288C | cds-NP_015231.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:3016-3840:+ | gene-YPL094C_SA1 | rna-NM_001183908.1_SA1 | cds-NP_015231.2_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:353563-354387:- | gene-YPL094C_ThermosaccDry | rna-NM_001183908.1_ThermosaccDry | cds-NP_015231.2_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:368538-369362:- | gene-YPL094C_VR1 | rna-NM_001183908.1_VR1 | cds-NP_015231.2_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:352884-353708:- | gene-YPL094C_ZTW1 | rna-NM_001183908.1_ZTW1 | cds-NP_015231.2_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:354554-355378:- | gene-YPL094C_Sparadoxus | rna-NM_001183908.1_Sparadoxus | cds-NP_015231.2_Sparadoxus | 92.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |