Gene name: SEC39
Reference locus (S288C): YLR440C
Gene biotype: protein_coding
Description: Protein transport protein SEC39; Component of the Dsl1p tethering complex; this complex interacts with ER SNAREs Sec20p and Use1p; mediates Sey1p-independent homotypic ER fusion; proposed to be involved in protein secretion; localizes to the ER and nuclear envelope
Top 10 interactors (score): DSL1 (0.999); TIP20 (0.999); SEC20 (0.996); USE1 (0.994); UFE1 (0.987); SEC22 (0.907); RET2 (0.895); SEC17 (0.837); COP1 (0.836); SEC26 (0.833); RET3 (0.806); SEC27 (0.802); SEC21 (0.795); SLY1 (0.793); YPT1 (0.786); SEC18 (0.769); YKT6 (0.762); SEC28 (0.713); SEC6 (0.69); SEY1 (0.688)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:953836-955965:- | gene-YLR440C_AKU4011 | rna-NM_001182328.3_AKU4011 | cds-NP_013545.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:186301-188430:- | gene-YLR440C_BG1 | rna-NM_001182328.3_BG1 | cds-NP_013545.3_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:992145-994274:- | gene-YLR440C_Bruggeman | rna-NM_001182328.3_Bruggeman | cds-NP_013545.3_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:988147-990276:- | gene-YLR440C_CAT1 | rna-NM_001182328.3_CAT1 | cds-NP_013545.3_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:989427-991556:- | gene-YLR440C_CBS1585 | rna-NM_001182328.3_CBS1585 | cds-NP_013545.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:978779-980908:- | gene-YLR440C_CBS436 | rna-NM_001182328.3_CBS436 | cds-NP_013545.3_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:1025467-1027596:- | gene-YLR440C_CBS6412 | rna-NM_001182328.3_CBS6412 | cds-NP_013545.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:990215-992344:- | gene-YLR440C_CBS6413 | rna-NM_001182328.3_CBS6413 | cds-NP_013545.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:1000185-1002314:- | gene-YLR440C_CENPK1137D | rna-NM_001182328.3_CENPK1137D | cds-NP_013545.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:946856-948985:- | gene-YLR440C_EthanolRed | rna-NM_001182328.3_EthanolRed | cds-NP_013545.3_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:982127-984256:- | gene-YLR440C_FaliES1 | rna-NM_001182328.3_FaliES1 | cds-NP_013545.3_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000194.1:34425-36554:+ | gene-YLR440C_JAY291 | rna-NM_001182328.3_JAY291 | cds-NP_013545.3_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:990997-993126:- | gene-YLR440C_MUCL30387 | rna-NM_001182328.3_MUCL30387 | cds-NP_013545.3_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:998354-1000483:- | gene-YLR440C_MUCL30388 | rna-NM_001182328.3_MUCL30388 | cds-NP_013545.3_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:990647-992776:- | gene-YLR440C_MUCL39482 | rna-NM_001182328.3_MUCL39482 | cds-NP_013545.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:991145-993274:- | gene-YLR440C_MUCL42920 | rna-NM_001182328.3_MUCL42920 | cds-NP_013545.3_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:1015542-1017671:- | gene-YLR440C_NCIM3186 | rna-NM_001182328.3_NCIM3186 | cds-NP_013545.3_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:1000081-1002210:- | gene-YLR440C_NCYC1407 | rna-NM_001182328.3_NCYC1407 | cds-NP_013545.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:986532-988661:- | gene-YLR440C_PE2H3 | rna-NM_001182328.3_PE2H3 | cds-NP_013545.3_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:986276-988405:- | gene-YLR440C_PE2H4 | rna-NM_001182328.3_PE2H4 | cds-NP_013545.3_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:1015568-1017697:- | gene-YLR440C_S288C | rna-NM_001182328.3_S288C | cds-NP_013545.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:42252-44381:+ | gene-YLR440C_SA1 | rna-NM_001182328.3_SA1 | cds-NP_013545.3_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:985206-987335:- | gene-YLR440C_ThermosaccDry | rna-NM_001182328.3_ThermosaccDry | cds-NP_013545.3_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:991637-993766:- | gene-YLR440C_VR1 | rna-NM_001182328.3_VR1 | cds-NP_013545.3_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:315480-317609:- | gene-YLR440C_ZTW1 | rna-NM_001182328.3_ZTW1 | cds-NP_013545.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:964516-966645:- | gene-YLR440C_Sparadoxus | rna-NM_001182328.3_Sparadoxus | cds-NP_013545.3_Sparadoxus | 86.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |