Gene name: SEC31
Reference locus (S288C): YDL195W
Gene biotype: protein_coding
Description: Protein transport protein SEC31; Component of the Sec13p-Sec31p complex of the COPII vesicle coat; COPII coat is required for vesicle formation in ER to Golgi transport; mutant has increased aneuploidy tolerance
Top 10 interactors (score): SAR1 (0.999); SEC16 (0.999); SFB2 (0.999); SEC24 (0.999); SEC13 (0.999); SFB3 (0.999); SEC23 (0.999); PEF1 (0.998); NEL1 (0.993); CHC1 (0.987); SEC12 (0.985); BET3 (0.981); COP1 (0.962); SEC22 (0.959); SEC21 (0.959); SEC27 (0.954); SEC1 (0.954); DDL1 (0.948); SED5 (0.932); BET5 (0.923)
Homologues (species, bitscore): SEC31A (Homo sapiens, 267.3); Sec31a (Mus musculus, 271.9); sec31b (Danio rerio, 279.3); sec31a (Xenopus tropicalis, 260.8); Sec31 (Drosophila melanogaster, 258.5); sec-31 (Caenorhabditis elegans, 122.1); AT3G63460 (Arabidopsis thaliana, 237.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:90696-94517:+ | gene-YDL195W_AKU4011 | rna-NM_001180255.2_AKU4011 | cds-NP_010086.2_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:454156-457977:- | gene-YDL195W_BG1 | rna-NM_001180255.2_BG1 | cds-NP_010086.2_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:107056-110877:+ | gene-YDL195W_Bruggeman | rna-NM_001180255.2_Bruggeman | cds-NP_010086.2_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:109292-113113:+ | gene-YDL195W_CAT1 | rna-NM_001180255.2_CAT1 | cds-NP_010086.2_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:89548-93369:+ | gene-YDL195W_CBS1585 | rna-NM_001180255.2_CBS1585 | cds-NP_010086.2_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:304447-308268:+ | gene-YDL195W_CBS436 | rna-NM_001180255.2_CBS436 | cds-NP_010086.2_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:89662-93483:+ | gene-YDL195W_CBS6412 | rna-NM_001180255.2_CBS6412 | cds-NP_010086.2_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:107206-111027:+ | gene-YDL195W_CBS6413 | rna-NM_001180255.2_CBS6413 | cds-NP_010086.2_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:105874-109700:+ | gene-YDL195W_CENPK1137D | rna-NM_001180255.2_CENPK1137D | cds-NP_010086.2_CENPK1137D | 99.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:103347-107168:+ | gene-YDL195W_EthanolRed | rna-NM_001180255.2_EthanolRed | cds-NP_010086.2_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:107953-111774:+ | gene-YDL195W_FaliES1 | rna-NM_001180255.2_FaliES1 | cds-NP_010086.2_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000344.1:7481-11302:- | gene-YDL195W_JAY291 | rna-NM_001180255.2_JAY291 | cds-NP_010086.2_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:105323-109144:+ | gene-YDL195W_MUCL30387 | rna-NM_001180255.2_MUCL30387 | cds-NP_010086.2_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:95137-98958:+ | gene-YDL195W_MUCL30388 | rna-NM_001180255.2_MUCL30388 | cds-NP_010086.2_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:90392-94213:+ | gene-YDL195W_MUCL39482 | rna-NM_001180255.2_MUCL39482 | cds-NP_010086.2_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:106461-110282:+ | gene-YDL195W_MUCL42920 | rna-NM_001180255.2_MUCL42920 | cds-NP_010086.2_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:107131-110952:+ | gene-YDL195W_NCIM3186 | rna-NM_001180255.2_NCIM3186 | cds-NP_010086.2_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:90349-94170:+ | gene-YDL195W_NCYC1407 | rna-NM_001180255.2_NCYC1407 | cds-NP_010086.2_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:98096-101917:+ | gene-YDL195W_PE2H3 | rna-NM_001180255.2_PE2H3 | cds-NP_010086.2_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:98106-101927:+ | gene-YDL195W_PE2H4 | rna-NM_001180255.2_PE2H4 | cds-NP_010086.2_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:107208-111029:+ | gene-YDL195W_S288C | rna-NM_001180255.2_S288C | cds-NP_010086.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000090.1:21699-25520:+ | gene-YDL195W_SA1 | rna-NM_001180255.2_SA1 | cds-NP_010086.2_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:107712-111533:+ | gene-YDL195W_ThermosaccDry | rna-NM_001180255.2_ThermosaccDry | cds-NP_010086.2_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:108646-112467:+ | gene-YDL195W_VR1 | rna-NM_001180255.2_VR1 | cds-NP_010086.2_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:106385-110206:+ | gene-YDL195W_ZTW1 | rna-NM_001180255.2_ZTW1 | cds-NP_010086.2_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:109798-113622:+ | gene-YDL195W_Sparadoxus | rna-NM_001180255.2_Sparadoxus | cds-NP_010086.2_Sparadoxus | 90.8 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |