Gene name: SEC28
Reference locus (S288C): YIL076W
Gene biotype: protein_coding
Description: Epsilon-COP subunit of the coatomer; regulates retrograde Golgi-to-ER protein traffic; stabilizes Cop1p, the alpha-COP and the coatomer complex; non-essential for cell growth; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): RET2 (0.999); COP1 (0.999); SEC21 (0.999); RET3 (0.999); SEC26 (0.999); SEC27 (0.999); SEC13 (0.993); COX6 (0.962); IMG2 (0.962); ERV25 (0.926); ARF1 (0.909); PUP3 (0.896); ERD2 (0.885); VID24 (0.86); SPS18 (0.85); BET1 (0.843); SEC18 (0.842); SEC24 (0.81); SEC22 (0.791); ARF2 (0.786)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:213326-214216:+ | gene-YIL076W_AKU4011 | rna-NM_001179426.1_AKU4011 | cds-NP_012189.2_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000164.1:75259-76149:+ | gene-YIL076W_BG1 | rna-NM_001179426.1_BG1 | cds-NP_012189.2_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:218742-219632:+ | gene-YIL076W_Bruggeman | rna-NM_001179426.1_Bruggeman | cds-NP_012189.2_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:209021-209911:+ | gene-YIL076W_CAT1 | rna-NM_001179426.1_CAT1 | cds-NP_012189.2_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:212897-213787:+ | gene-YIL076W_CBS1585 | rna-NM_001179426.1_CBS1585 | cds-NP_012189.2_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:208949-209839:+ | gene-YIL076W_CBS436 | rna-NM_001179426.1_CBS436 | cds-NP_012189.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:210274-211164:+ | gene-YIL076W_CBS6412 | rna-NM_001179426.1_CBS6412 | cds-NP_012189.2_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:204817-205707:+ | gene-YIL076W_CBS6413 | rna-NM_001179426.1_CBS6413 | cds-NP_012189.2_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:208362-209252:+ | gene-YIL076W_CENPK1137D | rna-NM_001179426.1_CENPK1137D | cds-NP_012189.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:197621-198511:+ | gene-YIL076W_EthanolRed | rna-NM_001179426.1_EthanolRed | cds-NP_012189.2_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:214529-215419:+ | gene-YIL076W_FaliES1 | rna-NM_001179426.1_FaliES1 | cds-NP_012189.2_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000025.1:14090-14980:- | gene-YIL076W_JAY291 | rna-NM_001179426.1_JAY291 | cds-NP_012189.2_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:216958-217848:+ | gene-YIL076W_MUCL30387 | rna-NM_001179426.1_MUCL30387 | cds-NP_012189.2_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:213567-214457:+ | gene-YIL076W_MUCL30388 | rna-NM_001179426.1_MUCL30388 | cds-NP_012189.2_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:213744-214634:+ | gene-YIL076W_MUCL39482 | rna-NM_001179426.1_MUCL39482 | cds-NP_012189.2_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:217105-217995:+ | gene-YIL076W_MUCL42920 | rna-NM_001179426.1_MUCL42920 | cds-NP_012189.2_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:216658-217548:+ | gene-YIL076W_NCIM3186 | rna-NM_001179426.1_NCIM3186 | cds-NP_012189.2_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:218021-218911:+ | gene-YIL076W_NCYC1407 | rna-NM_001179426.1_NCYC1407 | cds-NP_012189.2_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:212003-212893:+ | gene-YIL076W_PE2H3 | rna-NM_001179426.1_PE2H3 | cds-NP_012189.2_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:206720-207610:+ | gene-YIL076W_PE2H4 | rna-NM_001179426.1_PE2H4 | cds-NP_012189.2_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:216658-217548:+ | gene-YIL076W_S288C | rna-NM_001179426.1_S288C | cds-NP_012189.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000031.1:108286-109176:- | gene-YIL076W_SA1 | rna-NM_001179426.1_SA1 | cds-NP_012189.2_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:213192-214082:+ | gene-YIL076W_ThermosaccDry | rna-NM_001179426.1_ThermosaccDry | cds-NP_012189.2_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:210878-211768:+ | gene-YIL076W_VR1 | rna-NM_001179426.1_VR1 | cds-NP_012189.2_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:187455-188345:+ | gene-YIL076W_ZTW1 | rna-NM_001179426.1_ZTW1 | cds-NP_012189.2_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:211568-212457:+ | gene-YIL076W_Sparadoxus | rna-NM_001179426.1_Sparadoxus | cds-NP_012189.2_Sparadoxus | 90.6 | 99.8 | Verified | 1 | 1 | 0 | False | False | False | True | False |