Gene name: SEC27
Reference locus (S288C): YGL137W
Gene biotype: protein_coding
Description: Coatomer subunit beta; Essential beta'-coat protein of the COPI coatomer; involved in ER-to-Golgi and Golgi-to-ER transport; contains WD40 domains that mediate cargo selective interactions; 45% sequence identity to mammalian beta'-COP
Top 10 interactors (score): SEC28 (0.999); RET3 (0.999); RET2 (0.999); COP1 (0.999); SEC21 (0.999); SEC26 (0.999); ARF1 (0.978); SEC23 (0.974); SEC13 (0.968); GLO3 (0.958); SEC18 (0.958); BET1 (0.954); SEC31 (0.954); SEC22 (0.946); ARF2 (0.935); ERV25 (0.923); USO1 (0.918); ERD2 (0.916); UFE1 (0.906); SEC24 (0.904)
Homologues (species, bitscore): COPB2 (Homo sapiens, 790.4); Copb2 (Mus musculus, 790.0); copb2 (Danio rerio, 785.4); copb2 (Xenopus tropicalis, 783.5); beta'COP (Drosophila melanogaster, 744.2); copb-2 (Caenorhabditis elegans, 745.0); AT1G52360 (Arabidopsis thaliana, 763.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:252432-255301:+ | gene-YGL137W_AKU4011 | rna-NM_001181002.1_AKU4011 | cds-NP_011378.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:149626-152495:- | gene-YGL137W_BG1 | rna-NM_001181002.1_BG1 | cds-NP_011378.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:254884-257753:+ | gene-YGL137W_Bruggeman | rna-NM_001181002.1_Bruggeman | cds-NP_011378.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:250472-253341:+ | gene-YGL137W_CAT1 | rna-NM_001181002.1_CAT1 | cds-NP_011378.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:255814-258683:+ | gene-YGL137W_CBS1585 | rna-NM_001181002.1_CBS1585 | cds-NP_011378.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:250424-253293:+ | gene-YGL137W_CBS436 | rna-NM_001181002.1_CBS436 | cds-NP_011378.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:242024-244893:+ | gene-YGL137W_CBS6412 | rna-NM_001181002.1_CBS6412 | cds-NP_011378.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:250370-253239:+ | gene-YGL137W_CBS6413 | rna-NM_001181002.1_CBS6413 | cds-NP_011378.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:250128-252997:+ | gene-YGL137W_CENPK1137D | rna-NM_001181002.1_CENPK1137D | cds-NP_011378.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:242604-245473:+ | gene-YGL137W_EthanolRed | rna-NM_001181002.1_EthanolRed | cds-NP_011378.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:243850-246719:+ | gene-YGL137W_FaliES1 | rna-NM_001181002.1_FaliES1 | cds-NP_011378.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000090.1:93676-96545:+ | gene-YGL137W_JAY291 | rna-NM_001181002.1_JAY291 | cds-NP_011378.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:251854-254723:+ | gene-YGL137W_MUCL30387 | rna-NM_001181002.1_MUCL30387 | cds-NP_011378.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:254972-257841:+ | gene-YGL137W_MUCL30388 | rna-NM_001181002.1_MUCL30388 | cds-NP_011378.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:252595-255464:+ | gene-YGL137W_MUCL39482 | rna-NM_001181002.1_MUCL39482 | cds-NP_011378.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:255846-258715:+ | gene-YGL137W_MUCL42920 | rna-NM_001181002.1_MUCL42920 | cds-NP_011378.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:249869-252738:+ | gene-YGL137W_NCIM3186 | rna-NM_001181002.1_NCIM3186 | cds-NP_011378.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:244086-246955:+ | gene-YGL137W_NCYC1407 | rna-NM_001181002.1_NCYC1407 | cds-NP_011378.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:245975-248844:+ | gene-YGL137W_PE2H3 | rna-NM_001181002.1_PE2H3 | cds-NP_011378.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:250973-253842:+ | gene-YGL137W_PE2H4 | rna-NM_001181002.1_PE2H4 | cds-NP_011378.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:249869-252738:+ | gene-YGL137W_S288C | rna-NM_001181002.1_S288C | cds-NP_011378.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000081.1:2009-4878:- | gene-YGL137W_SA1 | rna-NM_001181002.1_SA1 | cds-NP_011378.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:244079-246948:+ | gene-YGL137W_ThermosaccDry | rna-NM_001181002.1_ThermosaccDry | cds-NP_011378.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:250889-253758:+ | gene-YGL137W_VR1 | rna-NM_001181002.1_VR1 | cds-NP_011378.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:242156-245025:+ | gene-YGL137W_ZTW1 | rna-NM_001181002.1_ZTW1 | cds-NP_011378.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:248190-251094:+ | gene-YGL137W_Sparadoxus | rna-NM_001181002.1_Sparadoxus | cds-NP_011378.1_Sparadoxus | 91.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |