Gene name: SEC26
Reference locus (S288C): YDR238C
Gene biotype: protein_coding
Description: Coatomer subunit beta; Essential beta-coat protein of the COPI coatomer; involved in ER-to-Golgi protein trafficking and maintenance of normal ER morphology; shares 43% sequence identity with mammalian beta-coat protein (beta-COP)
Top 10 interactors (score): RET2 (0.999); SEC21 (0.999); COP1 (0.999); SEC27 (0.999); SEC28 (0.999); RET3 (0.999); ERV25 (0.99); SEC23 (0.986); USO1 (0.986); ERP1 (0.984); ERP6 (0.984); ARF1 (0.984); GLO3 (0.98); SEC13 (0.968); SEC7 (0.966); STT3 (0.965); GEA2 (0.951); ARF2 (0.947); NEL1 (0.947); SLY1 (0.918)
Homologues (species, bitscore): COPB1 (Homo sapiens, 785.0); Copb1 (Mus musculus, 786.9); copb1 (Danio rerio, 770.0); copb1 (Xenopus tropicalis, 768.1); betaCOP (Drosophila melanogaster, 745.0); Y25C1A.5 (Caenorhabditis elegans, 688.3); AT4G31490 (Arabidopsis thaliana, 692.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:894571-897492:- | gene-YDR238C_AKU4011 | rna-NM_001180546.3_AKU4011 | cds-NP_010524.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:228316-231237:+ | gene-YDR238C_BG1 | rna-NM_001180546.3_BG1 | cds-NP_010524.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:926897-929818:- | gene-YDR238C_Bruggeman | rna-NM_001180546.3_Bruggeman | cds-NP_010524.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:914182-917103:- | gene-YDR238C_CAT1 | rna-NM_001180546.3_CAT1 | cds-NP_010524.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:884920-887841:- | gene-YDR238C_CBS1585 | rna-NM_001180546.3_CBS1585 | cds-NP_010524.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:913949-916870:- | gene-YDR238C_CBS436 | rna-NM_001180546.3_CBS436 | cds-NP_010524.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:881680-884601:- | gene-YDR238C_CBS6412 | rna-NM_001180546.3_CBS6412 | cds-NP_010524.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:912282-915203:- | gene-YDR238C_CBS6413 | rna-NM_001180546.3_CBS6413 | cds-NP_010524.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:936825-939746:- | gene-YDR238C_CENPK1137D | rna-NM_001180546.3_CENPK1137D | cds-NP_010524.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:895304-898225:- | gene-YDR238C_EthanolRed | rna-NM_001180546.3_EthanolRed | cds-NP_010524.3_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:903506-906427:- | gene-YDR238C_FaliES1 | rna-NM_001180546.3_FaliES1 | cds-NP_010524.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000348.1:5167-8088:+ | gene-YDR238C_JAY291 | rna-NM_001180546.3_JAY291 | cds-NP_010524.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:912795-915716:- | gene-YDR238C_MUCL30387 | rna-NM_001180546.3_MUCL30387 | cds-NP_010524.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:900825-903746:- | gene-YDR238C_MUCL30388 | rna-NM_001180546.3_MUCL30388 | cds-NP_010524.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:886325-889246:- | gene-YDR238C_MUCL39482 | rna-NM_001180546.3_MUCL39482 | cds-NP_010524.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:825599-828520:- | gene-YDR238C_MUCL42920 | rna-NM_001180546.3_MUCL42920 | cds-NP_010524.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:937818-940739:- | gene-YDR238C_NCIM3186 | rna-NM_001180546.3_NCIM3186 | cds-NP_010524.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:889993-892914:- | gene-YDR238C_NCYC1407 | rna-NM_001180546.3_NCYC1407 | cds-NP_010524.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:906252-909173:- | gene-YDR238C_PE2H3 | rna-NM_001180546.3_PE2H3 | cds-NP_010524.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:911529-914450:- | gene-YDR238C_PE2H4 | rna-NM_001180546.3_PE2H4 | cds-NP_010524.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:937895-940816:- | gene-YDR238C_S288C | rna-NM_001180546.3_S288C | cds-NP_010524.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:144089-147010:- | gene-YDR238C_SA1 | rna-NM_001180546.3_SA1 | cds-NP_010524.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:901660-904581:- | gene-YDR238C_ThermosaccDry | rna-NM_001180546.3_ThermosaccDry | cds-NP_010524.3_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:916852-919773:- | gene-YDR238C_VR1 | rna-NM_001180546.3_VR1 | cds-NP_010524.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:164342-167263:- | gene-YDR238C_ZTW1 | rna-NM_001180546.3_ZTW1 | cds-NP_010524.3_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:906518-909439:- | gene-YDR238C_Sparadoxus | rna-NM_001180546.3_Sparadoxus | cds-NP_010524.3_Sparadoxus | 92.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |