Gene name: SEC24
Reference locus (S288C): YIL109C
Gene biotype: protein_coding
Description: Protein transport protein SEC24; Component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat; required for cargo selection during vesicle formation in ER to Golgi transport; homologous to Sfb3p; SEC24 has a paralog, SFB2, that arose from the whole genome duplication; Belongs to the SEC23/SEC24 family. SEC24 subfamily
Top 10 interactors (score): SEC23 (0.999); SEC13 (0.999); SAR1 (0.999); SEC31 (0.999); SEC16 (0.999); SEC22 (0.997); SFB3 (0.994); BET1 (0.994); SED5 (0.992); NEL1 (0.978); SEC12 (0.975); GRH1 (0.968); ATG9 (0.965); SYS1 (0.958); BET3 (0.952); BOS1 (0.948); SFB2 (0.944); YPT1 (0.935); SEC21 (0.935); SIT4 (0.931)
Homologues (species, bitscore): SEC24B (Homo sapiens, 431.8); Sec24a (Mus musculus, 439.5); sec24a (Danio rerio, 435.6); sec24b (Xenopus tropicalis, 422.5); Sec24AB (Drosophila melanogaster, 399.4); sec-24.2 (Caenorhabditis elegans, 376.3); ERMO2 (Arabidopsis thaliana, 388.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:158857-161637:- | gene-YIL109C_AKU4011 | rna-NM_001179457.3_AKU4011 | cds-NP_012157.3_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000164.1:21784-24564:- | gene-YIL109C_BG1 | rna-NM_001179457.3_BG1 | cds-NP_012157.3_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:163494-166274:- | gene-YIL109C_Bruggeman | rna-NM_001179457.3_Bruggeman | cds-NP_012157.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:155536-158316:- | gene-YIL109C_CAT1 | rna-NM_001179457.3_CAT1 | cds-NP_012157.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:159116-161896:- | gene-YIL109C_CBS1585 | rna-NM_001179457.3_CBS1585 | cds-NP_012157.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:150034-152814:- | gene-YIL109C_CBS436 | rna-NM_001179457.3_CBS436 | cds-NP_012157.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:156491-159271:- | gene-YIL109C_CBS6412 | rna-NM_001179457.3_CBS6412 | cds-NP_012157.3_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:150145-152925:- | gene-YIL109C_CBS6413 | rna-NM_001179457.3_CBS6413 | cds-NP_012157.3_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:149000-151780:- | gene-YIL109C_CENPK1137D | rna-NM_001179457.3_CENPK1137D | cds-NP_012157.3_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:144081-146861:- | gene-YIL109C_EthanolRed | rna-NM_001179457.3_EthanolRed | cds-NP_012157.3_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:160080-162860:- | gene-YIL109C_FaliES1 | rna-NM_001179457.3_FaliES1 | cds-NP_012157.3_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000025.1:65688-68468:+ | gene-YIL109C_JAY291 | rna-NM_001179457.3_JAY291 | cds-NP_012157.3_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:160331-163111:- | gene-YIL109C_MUCL30387 | rna-NM_001179457.3_MUCL30387 | cds-NP_012157.3_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:159071-161851:- | gene-YIL109C_MUCL30388 | rna-NM_001179457.3_MUCL30388 | cds-NP_012157.3_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:159960-162740:- | gene-YIL109C_MUCL39482 | rna-NM_001179457.3_MUCL39482 | cds-NP_012157.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:163216-165996:- | gene-YIL109C_MUCL42920 | rna-NM_001179457.3_MUCL42920 | cds-NP_012157.3_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:157385-160165:- | gene-YIL109C_NCIM3186 | rna-NM_001179457.3_NCIM3186 | cds-NP_012157.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:164004-166784:- | gene-YIL109C_NCYC1407 | rna-NM_001179457.3_NCYC1407 | cds-NP_012157.3_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:158494-161274:- | gene-YIL109C_PE2H3 | rna-NM_001179457.3_PE2H3 | cds-NP_012157.3_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:152534-155314:- | gene-YIL109C_PE2H4 | rna-NM_001179457.3_PE2H4 | cds-NP_012157.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:157385-160165:- | gene-YIL109C_S288C | rna-NM_001179457.3_S288C | cds-NP_012157.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000058.1:23202-25982:+ | gene-YIL109C_SA1 | rna-NM_001179457.3_SA1 | cds-NP_012157.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:158737-161517:- | gene-YIL109C_ThermosaccDry | rna-NM_001179457.3_ThermosaccDry | cds-NP_012157.3_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:155644-158424:- | gene-YIL109C_VR1 | rna-NM_001179457.3_VR1 | cds-NP_012157.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:133680-136460:- | gene-YIL109C_ZTW1 | rna-NM_001179457.3_ZTW1 | cds-NP_012157.3_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:151480-154260:- | gene-YIL109C_Sparadoxus | rna-NM_001179457.3_Sparadoxus | cds-NP_012157.3_Sparadoxus | 92.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |