Gene name: SEC22
Reference locus (S288C): YLR268W
Gene biotype: protein_coding
Description: R-SNARE protein; assembles into SNARE complex with Bet1p, Bos1p and Sed5p; cycles between the ER and Golgi complex; involved in anterograde and retrograde transport between the ER and Golgi; synaptobrevin homolog
Top 10 interactors (score): BET1 (0.999); GOS1 (0.999); SEC23 (0.999); UFE1 (0.999); SSO1 (0.999); SLY1 (0.999); BOS1 (0.999); SED5 (0.999); SEC20 (0.998); SEC17 (0.998); SEC9 (0.998); SEC24 (0.997); USE1 (0.997); VTI1 (0.996); VAM3 (0.995); SFT1 (0.994); TIP20 (0.992); SEC18 (0.992); SEC21 (0.992); YPT1 (0.992)
Homologues (species, bitscore): SEC22B (Homo sapiens, 159.5); Sec22b (Mus musculus, 159.5); sec22bb (Danio rerio, 156.4); sec22b (Xenopus tropicalis, 161.4); Sec22 (Drosophila melanogaster, 120.6); sec-22 (Caenorhabditis elegans, 124.0); SEC22 (Arabidopsis thaliana, 156.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:628444-629088:+ | gene-YLR268W_AKU4011 | rna-NM_001182155.1_AKU4011 | cds-NP_013370.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:102791-103435:- | gene-YLR268W_BG1 | rna-NM_001182155.1_BG1 | cds-NP_013370.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:662705-663349:+ | gene-YLR268W_Bruggeman | rna-NM_001182155.1_Bruggeman | cds-NP_013370.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:661891-662535:+ | gene-YLR268W_CAT1 | rna-NM_001182155.1_CAT1 | cds-NP_013370.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:663939-664583:+ | gene-YLR268W_CBS1585 | rna-NM_001182155.1_CBS1585 | cds-NP_013370.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:648176-648820:+ | gene-YLR268W_CBS436 | rna-NM_001182155.1_CBS436 | cds-NP_013370.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:626914-627558:+ | gene-YLR268W_CBS6412 | rna-NM_001182155.1_CBS6412 | cds-NP_013370.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:664235-664879:+ | gene-YLR268W_CBS6413 | rna-NM_001182155.1_CBS6413 | cds-NP_013370.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:664776-665420:+ | gene-YLR268W_CENPK1137D | rna-NM_001182155.1_CENPK1137D | cds-NP_013370.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:622645-623289:+ | gene-YLR268W_EthanolRed | rna-NM_001182155.1_EthanolRed | cds-NP_013370.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:651476-652120:+ | gene-YLR268W_FaliES1 | rna-NM_001182155.1_FaliES1 | cds-NP_013370.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000136.1:7271-7915:- | gene-YLR268W_JAY291 | rna-NM_001182155.1_JAY291 | cds-NP_013370.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:663560-664204:+ | gene-YLR268W_MUCL30387 | rna-NM_001182155.1_MUCL30387 | cds-NP_013370.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:668329-668973:+ | gene-YLR268W_MUCL30388 | rna-NM_001182155.1_MUCL30388 | cds-NP_013370.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:664920-665564:+ | gene-YLR268W_MUCL39482 | rna-NM_001182155.1_MUCL39482 | cds-NP_013370.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:659706-660350:+ | gene-YLR268W_MUCL42920 | rna-NM_001182155.1_MUCL42920 | cds-NP_013370.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:680174-680818:+ | gene-YLR268W_NCIM3186 | rna-NM_001182155.1_NCIM3186 | cds-NP_013370.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:651908-652552:+ | gene-YLR268W_NCYC1407 | rna-NM_001182155.1_NCYC1407 | cds-NP_013370.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:655697-656341:+ | gene-YLR268W_PE2H3 | rna-NM_001182155.1_PE2H3 | cds-NP_013370.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:655441-656085:+ | gene-YLR268W_PE2H4 | rna-NM_001182155.1_PE2H4 | cds-NP_013370.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:680200-680844:+ | gene-YLR268W_S288C | rna-NM_001182155.1_S288C | cds-NP_013370.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:7516-8160:- | gene-YLR268W_SA1 | rna-NM_001182155.1_SA1 | cds-NP_013370.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:653429-654073:+ | gene-YLR268W_ThermosaccDry | rna-NM_001182155.1_ThermosaccDry | cds-NP_013370.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:664766-665410:+ | gene-YLR268W_VR1 | rna-NM_001182155.1_VR1 | cds-NP_013370.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:177729-178373:+ | gene-YLR268W_ZTW1 | rna-NM_001182155.1_ZTW1 | cds-NP_013370.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:639413-640057:+ | gene-YLR268W_Sparadoxus | rna-NM_001182155.1_Sparadoxus | cds-NP_013370.1_Sparadoxus | 93.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |