Gene name: SEC21
Reference locus (S288C): YNL287W
Gene biotype: protein_coding
Description: Gamma subunit of coatomer; coatomer is a heptameric protein complex that together with Arf1p forms the COPI coat; involved in ER to Golgi transport of selective cargo
Top 10 interactors (score): COP1 (0.999); RET2 (0.999); SEC27 (0.999); SEC28 (0.999); SEC26 (0.999); RET3 (0.999); SEC23 (0.995); GLO3 (0.995); SEC22 (0.992); ARF1 (0.992); GEA1 (0.988); GEA2 (0.984); SEC13 (0.983); BET1 (0.976); SAR1 (0.962); SEC31 (0.959); APL3 (0.945); ERV25 (0.94); NEL1 (0.936); SEC24 (0.935)
Homologues (species, bitscore): COPG2 (Homo sapiens, 506.9); Copg2 (Mus musculus, 514.2); copg2 (Danio rerio, 504.2); copg2 (Xenopus tropicalis, 481.9); gammaCOP (Drosophila melanogaster, 465.3); T14G10.5 (Caenorhabditis elegans, 491.9); AT4G34450 (Arabidopsis thaliana, 519.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:85803-88610:+ | gene-YNL287W_AKU4011 | rna-NM_001183125.1_AKU4011 | cds-NP_014112.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000074.1:2033-4840:- | gene-YNL287W_BG1 | rna-NM_001183125.1_BG1 | cds-NP_014112.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:95153-97960:+ | gene-YNL287W_Bruggeman | rna-NM_001183125.1_Bruggeman | cds-NP_014112.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:97758-100565:+ | gene-YNL287W_CAT1 | rna-NM_001183125.1_CAT1 | cds-NP_014112.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:86133-88940:+ | gene-YNL287W_CBS1585 | rna-NM_001183125.1_CBS1585 | cds-NP_014112.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:86625-89432:+ | gene-YNL287W_CBS436 | rna-NM_001183125.1_CBS436 | cds-NP_014112.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:82790-85597:+ | gene-YNL287W_CBS6412 | rna-NM_001183125.1_CBS6412 | cds-NP_014112.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:82981-85788:+ | gene-YNL287W_CBS6413 | rna-NM_001183125.1_CBS6413 | cds-NP_014112.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:85826-88633:+ | gene-YNL287W_CENPK1137D | rna-NM_001183125.1_CENPK1137D | cds-NP_014112.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:82837-85644:+ | gene-YNL287W_EthanolRed | rna-NM_001183125.1_EthanolRed | cds-NP_014112.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:83736-86543:+ | gene-YNL287W_FaliES1 | rna-NM_001183125.1_FaliES1 | cds-NP_014112.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000171.1:1689-4496:- | gene-YNL287W_JAY291 | rna-NM_001183125.1_JAY291 | cds-NP_014112.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:95661-98468:+ | gene-YNL287W_MUCL30387 | rna-NM_001183125.1_MUCL30387 | cds-NP_014112.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:88432-91239:+ | gene-YNL287W_MUCL30388 | rna-NM_001183125.1_MUCL30388 | cds-NP_014112.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:83767-86574:+ | gene-YNL287W_MUCL39482 | rna-NM_001183125.1_MUCL39482 | cds-NP_014112.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:85461-88268:+ | gene-YNL287W_MUCL42920 | rna-NM_001183125.1_MUCL42920 | cds-NP_014112.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:91963-94770:+ | gene-YNL287W_NCIM3186 | rna-NM_001183125.1_NCIM3186 | cds-NP_014112.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:85099-87906:+ | gene-YNL287W_NCYC1407 | rna-NM_001183125.1_NCYC1407 | cds-NP_014112.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:82300-85107:+ | gene-YNL287W_PE2H3 | rna-NM_001183125.1_PE2H3 | cds-NP_014112.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:81688-84495:+ | gene-YNL287W_PE2H4 | rna-NM_001183125.1_PE2H4 | cds-NP_014112.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:91994-94801:+ | gene-YNL287W_S288C | rna-NM_001183125.1_S288C | cds-NP_014112.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000052.1:2428-5235:- | gene-YNL287W_SA1 | rna-NM_001183125.1_SA1 | cds-NP_014112.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:84593-87400:+ | gene-YNL287W_ThermosaccDry | rna-NM_001183125.1_ThermosaccDry | cds-NP_014112.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:97120-99927:+ | gene-YNL287W_VR1 | rna-NM_001183125.1_VR1 | cds-NP_014112.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000029.1:75803-78610:+ | gene-YNL287W_ZTW1 | rna-NM_001183125.1_ZTW1 | cds-NP_014112.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:93850-96657:+ | gene-YNL287W_Sparadoxus | rna-NM_001183125.1_Sparadoxus | cds-NP_014112.1_Sparadoxus | 92.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |