Gene name: SEC20
Reference locus (S288C): YDR498C
Gene biotype: protein_coding
Description: Membrane glycoprotein v-SNARE; involved in retrograde transport from the Golgi to the endoplasmic reticulum (ER); required for N- and O-glycosylation in the Golgi but not in the ER and for efficient nuclear fusion during mating; mediates Sey1p-independent homotypic ER fusion; interacts with the Dsl1p complex through Tip20p; Belongs to the SEC20 family
Top 10 interactors (score): TIP20 (0.999); USE1 (0.999); UFE1 (0.999); SEC22 (0.998); SEC39 (0.996); DSL1 (0.992); BOS1 (0.991); YKT6 (0.988); BET1 (0.972); SEC9 (0.963); SED5 (0.961); NYV1 (0.956); SEC18 (0.947); SFT1 (0.946); SPO20 (0.946); GOS1 (0.946); SNC1 (0.931); VAM3 (0.918); SSO1 (0.912); SEC27 (0.901)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1385829-1386980:- | gene-YDR498C_AKU4011 | rna-NM_001180806.3_AKU4011 | cds-NP_010786.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000073.1:27387-28538:- | gene-YDR498C_BG1 | rna-NM_001180806.3_BG1 | cds-NP_010786.3_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1417175-1418326:- | gene-YDR498C_Bruggeman | rna-NM_001180806.3_Bruggeman | cds-NP_010786.3_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1394328-1395479:- | gene-YDR498C_CAT1 | rna-NM_001180806.3_CAT1 | cds-NP_010786.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1380071-1381222:- | gene-YDR498C_CBS1585 | rna-NM_001180806.3_CBS1585 | cds-NP_010786.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1399424-1400575:- | gene-YDR498C_CBS436 | rna-NM_001180806.3_CBS436 | cds-NP_010786.3_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1375713-1376864:- | gene-YDR498C_CBS6412 | rna-NM_001180806.3_CBS6412 | cds-NP_010786.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1398728-1399879:- | gene-YDR498C_CBS6413 | rna-NM_001180806.3_CBS6413 | cds-NP_010786.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1444537-1445688:- | gene-YDR498C_CENPK1137D | rna-NM_001180806.3_CENPK1137D | cds-NP_010786.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1389119-1390270:- | gene-YDR498C_EthanolRed | rna-NM_001180806.3_EthanolRed | cds-NP_010786.3_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1392672-1393823:- | gene-YDR498C_FaliES1 | rna-NM_001180806.3_FaliES1 | cds-NP_010786.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:90921-92072:- | gene-YDR498C_JAY291 | rna-NM_001180806.3_JAY291 | cds-NP_010786.3_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1399673-1400824:- | gene-YDR498C_MUCL30387 | rna-NM_001180806.3_MUCL30387 | cds-NP_010786.3_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1381693-1382844:- | gene-YDR498C_MUCL30388 | rna-NM_001180806.3_MUCL30388 | cds-NP_010786.3_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1371556-1372707:- | gene-YDR498C_MUCL39482 | rna-NM_001180806.3_MUCL39482 | cds-NP_010786.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1314346-1315497:- | gene-YDR498C_MUCL42920 | rna-NM_001180806.3_MUCL42920 | cds-NP_010786.3_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1445766-1446917:- | gene-YDR498C_NCIM3186 | rna-NM_001180806.3_NCIM3186 | cds-NP_010786.3_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1385342-1386493:- | gene-YDR498C_NCYC1407 | rna-NM_001180806.3_NCYC1407 | cds-NP_010786.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1396188-1397339:- | gene-YDR498C_PE2H3 | rna-NM_001180806.3_PE2H3 | cds-NP_010786.3_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1401763-1402914:- | gene-YDR498C_PE2H4 | rna-NM_001180806.3_PE2H4 | cds-NP_010786.3_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1445843-1446994:- | gene-YDR498C_S288C | rna-NM_001180806.3_S288C | cds-NP_010786.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:170141-171292:+ | gene-YDR498C_SA1 | rna-NM_001180806.3_SA1 | cds-NP_010786.3_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1396894-1398045:- | gene-YDR498C_ThermosaccDry | rna-NM_001180806.3_ThermosaccDry | cds-NP_010786.3_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1412634-1413785:- | gene-YDR498C_VR1 | rna-NM_001180806.3_VR1 | cds-NP_010786.3_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:439561-440712:- | gene-YDR498C_ZTW1 | rna-NM_001180806.3_ZTW1 | cds-NP_010786.3_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1399712-1400863:- | gene-YDR498C_Sparadoxus | rna-NM_001180806.3_Sparadoxus | cds-NP_010786.3_Sparadoxus | 88.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |