Gene name: SEC2
Reference locus (S288C): YNL272C
Gene biotype: protein_coding
Description: Guanyl-nucleotide exchange factor for the small G-protein Sec4p; essential for post-Golgi vesicle transport and for autophagy; associates with the exocyst, via exocyst subunit Sec15p, on secretory vesicles; Belongs to the SEC2 family
Top 10 interactors (score): SEC4 (0.999); SEC15 (0.999); YPT32 (0.993); YPT31 (0.981); GDI1 (0.968); SEC6 (0.958); DSS4 (0.948); SEC10 (0.947); SEC8 (0.945); SEC9 (0.918); MRS6 (0.914); SEC5 (0.914); MYO2 (0.909); SEC1 (0.906); SEC3 (0.902); YPT11 (0.897); SMY1 (0.886); EXO70 (0.836); YPT1 (0.832); CDC42 (0.821)
Homologues (species, bitscore): RAB3IP (Homo sapiens, 52.4); rab3ip (Xenopus tropicalis, 52.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:120608-122887:- | gene-YNL272C_AKU4011 | rna-NM_001183110.1_AKU4011 | cds-NP_014127.1_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:24491-26770:- | gene-YNL272C_BG1 | rna-NM_001183110.1_BG1 | cds-NP_014127.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:130401-132680:- | gene-YNL272C_Bruggeman | rna-NM_001183110.1_Bruggeman | cds-NP_014127.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:134110-136389:- | gene-YNL272C_CAT1 | rna-NM_001183110.1_CAT1 | cds-NP_014127.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:120998-123277:- | gene-YNL272C_CBS1585 | rna-NM_001183110.1_CBS1585 | cds-NP_014127.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:116080-118359:- | gene-YNL272C_CBS436 | rna-NM_001183110.1_CBS436 | cds-NP_014127.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:117420-119699:- | gene-YNL272C_CBS6412 | rna-NM_001183110.1_CBS6412 | cds-NP_014127.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:117699-119978:- | gene-YNL272C_CBS6413 | rna-NM_001183110.1_CBS6413 | cds-NP_014127.1_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:120630-122909:- | gene-YNL272C_CENPK1137D | rna-NM_001183110.1_CENPK1137D | cds-NP_014127.1_CENPK1137D | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:118230-120509:- | gene-YNL272C_EthanolRed | rna-NM_001183110.1_EthanolRed | cds-NP_014127.1_EthanolRed | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:112967-115246:- | gene-YNL272C_FaliES1 | rna-NM_001183110.1_FaliES1 | cds-NP_014127.1_FaliES1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000082.1:24199-26478:- | gene-YNL272C_JAY291 | rna-NM_001183110.1_JAY291 | cds-NP_014127.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:125943-128222:- | gene-YNL272C_MUCL30387 | rna-NM_001183110.1_MUCL30387 | cds-NP_014127.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:124005-126284:- | gene-YNL272C_MUCL30388 | rna-NM_001183110.1_MUCL30388 | cds-NP_014127.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:118488-120767:- | gene-YNL272C_MUCL39482 | rna-NM_001183110.1_MUCL39482 | cds-NP_014127.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:120741-123020:- | gene-YNL272C_MUCL42920 | rna-NM_001183110.1_MUCL42920 | cds-NP_014127.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:126774-129053:- | gene-YNL272C_NCIM3186 | rna-NM_001183110.1_NCIM3186 | cds-NP_014127.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:120355-122634:- | gene-YNL272C_NCYC1407 | rna-NM_001183110.1_NCYC1407 | cds-NP_014127.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:117535-119814:- | gene-YNL272C_PE2H3 | rna-NM_001183110.1_PE2H3 | cds-NP_014127.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:116923-119202:- | gene-YNL272C_PE2H4 | rna-NM_001183110.1_PE2H4 | cds-NP_014127.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:126805-129084:- | gene-YNL272C_S288C | rna-NM_001183110.1_S288C | cds-NP_014127.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000034.1:24264-26543:- | gene-YNL272C_SA1 | rna-NM_001183110.1_SA1 | cds-NP_014127.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:113824-116103:- | gene-YNL272C_ThermosaccDry | rna-NM_001183110.1_ThermosaccDry | cds-NP_014127.1_ThermosaccDry | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:132733-135012:- | gene-YNL272C_VR1 | rna-NM_001183110.1_VR1 | cds-NP_014127.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:24187-26466:- | gene-YNL272C_ZTW1 | rna-NM_001183110.1_ZTW1 | cds-NP_014127.1_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:124080-126359:- | gene-YNL272C_Sparadoxus | rna-NM_001183110.1_Sparadoxus | cds-NP_014127.1_Sparadoxus | 88.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |