Gene name: SEC16
Reference locus (S288C): YPL085W
Gene biotype: protein_coding
Description: COPII vesicle coat protein required for ER transport vesicle budding; essential factor in endoplasmic reticulum exit site (ERES) formation, as well as in COPII-mediated ER-to-Golgi traffic; bound to periphery of ER membranes and may act to stabilize initial COPII complexes; interacts with Sec23p, Sec24p and Sec31p
Top 10 interactors (score): SEC13 (0.999); SEC23 (0.999); SEC31 (0.999); SEC24 (0.999); SFB3 (0.999); SAR1 (0.995); SFB2 (0.993); SEC12 (0.991); APL3 (0.977); APM4 (0.962); SED4 (0.952); SEC22 (0.948); SED5 (0.935); SEN1 (0.929); TRA1 (0.928); USO1 (0.906); TOM1 (0.901); NEL1 (0.862); ERV25 (0.861); SEC27 (0.852)
Homologues (species, bitscore): SEC16B (Homo sapiens, 68.9); Sec16b (Mus musculus, 69.7); SEC16A (Xenopus tropicalis, 65.1); dp (Drosophila melanogaster, 57.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:364810-371397:+ | gene-YPL085W_AKU4011 | rna-NM_001183899.1_AKU4011 | cds-NP_015240.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:570490-577077:+ | gene-YPL085W_BG1 | rna-NM_001183899.1_BG1 | cds-NP_015240.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:441133-447720:+ | gene-YPL085W_Bruggeman | rna-NM_001183899.1_Bruggeman | cds-NP_015240.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:481475-488062:+ | gene-YPL085W_CAT1 | rna-NM_001183899.1_CAT1 | cds-NP_015240.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:368877-375464:+ | gene-YPL085W_CBS1585 | rna-NM_001183899.1_CBS1585 | cds-NP_015240.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:383426-390013:+ | gene-YPL085W_CBS436 | rna-NM_001183899.1_CBS436 | cds-NP_015240.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:373071-379658:+ | gene-YPL085W_CBS6412 | rna-NM_001183899.1_CBS6412 | cds-NP_015240.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:365425-372012:+ | gene-YPL085W_CBS6413 | rna-NM_001183899.1_CBS6413 | cds-NP_015240.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:387062-393626:+ | gene-YPL085W_CENPK1137D | rna-NM_001183899.1_CENPK1137D | cds-NP_015240.1_CENPK1137D | 97.4 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:363173-369760:+ | gene-YPL085W_EthanolRed | rna-NM_001183899.1_EthanolRed | cds-NP_015240.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:371003-377590:+ | gene-YPL085W_FaliES1 | rna-NM_001183899.1_FaliES1 | cds-NP_015240.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000350.1:13651-20237:- | gene-YPL085W_JAY291 | rna-NM_001183899.1_JAY291 | cds-NP_015240.1_JAY291 | 99.7 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:381962-388549:+ | gene-YPL085W_MUCL30387 | rna-NM_001183899.1_MUCL30387 | cds-NP_015240.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:380765-387352:+ | gene-YPL085W_MUCL30388 | rna-NM_001183899.1_MUCL30388 | cds-NP_015240.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:362206-368793:+ | gene-YPL085W_MUCL39482 | rna-NM_001183899.1_MUCL39482 | cds-NP_015240.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:420071-426658:+ | gene-YPL085W_MUCL42920 | rna-NM_001183899.1_MUCL42920 | cds-NP_015240.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:387050-393637:+ | gene-YPL085W_NCIM3186 | rna-NM_001183899.1_NCIM3186 | cds-NP_015240.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:368817-375404:+ | gene-YPL085W_NCYC1407 | rna-NM_001183899.1_NCYC1407 | cds-NP_015240.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:376085-382672:+ | gene-YPL085W_PE2H3 | rna-NM_001183899.1_PE2H3 | cds-NP_015240.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:375708-382295:+ | gene-YPL085W_PE2H4 | rna-NM_001183899.1_PE2H4 | cds-NP_015240.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:387067-393654:+ | gene-YPL085W_S288C | rna-NM_001183899.1_S288C | cds-NP_015240.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000057.1:9183-15770:+ | gene-YPL085W_SA1 | rna-NM_001183899.1_SA1 | cds-NP_015240.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:370803-377390:+ | gene-YPL085W_ThermosaccDry | rna-NM_001183899.1_ThermosaccDry | cds-NP_015240.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:385794-392381:+ | gene-YPL085W_VR1 | rna-NM_001183899.1_VR1 | cds-NP_015240.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:370114-376701:+ | gene-YPL085W_ZTW1 | rna-NM_001183899.1_ZTW1 | cds-NP_015240.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:371721-378302:+ | gene-YPL085W_Sparadoxus | rna-NM_001183899.1_Sparadoxus | cds-NP_015240.1_Sparadoxus | 83.7 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |