Gene name: SEC13
Reference locus (S288C): YLR208W
Gene biotype: protein_coding
Description: Protein transport protein SEC13; Structural component of 3 complexes; subunit of the Nup84p nuclear pore subcomplex that contributes to nucleocytoplasmic transport and NPC biogenesis; subunit of the COPII vesicle coat required for ER-to-Golgi transport; subunit of SEACAT, a subcomplex of the coatomer-related, vacuolar-associated SEA complex, that inhibits the TORC1 inhibitory role of SEACIT (Iml1p-Npr2p-Npr3p), a GAP for Gtr1p, thereby resulting in activation of TORC1 signaling; human SEC13 homolog
Top 10 interactors (score): NUP145 (0.999); NUP84 (0.999); SEC31 (0.999); NUP116 (0.999); RTC1 (0.999); SFB2 (0.999); SEC24 (0.999); SEC16 (0.999); NUP85 (0.999); NUP133 (0.999); SEH1 (0.999); SEC23 (0.999); SEA4 (0.999); SAR1 (0.999); NUP120 (0.999); MTC5 (0.999); SFB3 (0.999); NUP100 (0.998); IML1 (0.997); NPR2 (0.994)
Homologues (species, bitscore): SEC13 (Homo sapiens, 293.5); Sec13 (Mus musculus, 297.7); sec13 (Danio rerio, 285.0); sec13 (Xenopus tropicalis, 285.0); Sec13 (Drosophila melanogaster, 267.7); npp-20 (Caenorhabditis elegans, 224.2); AT3G01340 (Arabidopsis thaliana, 263.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:513704-514597:+ | gene-YLR208W_AKU4011 | rna-NM_001182095.1_AKU4011 | cds-NP_013309.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000177.1:70949-71842:+ | gene-YLR208W_BG1 | rna-NM_001182095.1_BG1 | cds-NP_013309.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:553928-554821:+ | gene-YLR208W_Bruggeman | rna-NM_001182095.1_Bruggeman | cds-NP_013309.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:553566-554459:+ | gene-YLR208W_CAT1 | rna-NM_001182095.1_CAT1 | cds-NP_013309.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:549196-550089:+ | gene-YLR208W_CBS1585 | rna-NM_001182095.1_CBS1585 | cds-NP_013309.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:539390-540283:+ | gene-YLR208W_CBS436 | rna-NM_001182095.1_CBS436 | cds-NP_013309.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:517758-518651:+ | gene-YLR208W_CBS6412 | rna-NM_001182095.1_CBS6412 | cds-NP_013309.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:549493-550386:+ | gene-YLR208W_CBS6413 | rna-NM_001182095.1_CBS6413 | cds-NP_013309.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:544196-545089:+ | gene-YLR208W_CENPK1137D | rna-NM_001182095.1_CENPK1137D | cds-NP_013309.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:513206-514099:+ | gene-YLR208W_EthanolRed | rna-NM_001182095.1_EthanolRed | cds-NP_013309.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:542133-543026:+ | gene-YLR208W_FaliES1 | rna-NM_001182095.1_FaliES1 | cds-NP_013309.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000004.1:69041-69934:+ | gene-YLR208W_JAY291 | rna-NM_001182095.1_JAY291 | cds-NP_013309.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:553979-554872:+ | gene-YLR208W_MUCL30387 | rna-NM_001182095.1_MUCL30387 | cds-NP_013309.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:558917-559810:+ | gene-YLR208W_MUCL30388 | rna-NM_001182095.1_MUCL30388 | cds-NP_013309.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:550179-551072:+ | gene-YLR208W_MUCL39482 | rna-NM_001182095.1_MUCL39482 | cds-NP_013309.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:550683-551576:+ | gene-YLR208W_MUCL42920 | rna-NM_001182095.1_MUCL42920 | cds-NP_013309.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:559525-560418:+ | gene-YLR208W_NCIM3186 | rna-NM_001182095.1_NCIM3186 | cds-NP_013309.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:542598-543491:+ | gene-YLR208W_NCYC1407 | rna-NM_001182095.1_NCYC1407 | cds-NP_013309.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:546842-547735:+ | gene-YLR208W_PE2H3 | rna-NM_001182095.1_PE2H3 | cds-NP_013309.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:546586-547479:+ | gene-YLR208W_PE2H4 | rna-NM_001182095.1_PE2H4 | cds-NP_013309.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:559551-560444:+ | gene-YLR208W_S288C | rna-NM_001182095.1_S288C | cds-NP_013309.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000042.1:69085-69978:+ | gene-YLR208W_SA1 | rna-NM_001182095.1_SA1 | cds-NP_013309.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:544636-545529:+ | gene-YLR208W_ThermosaccDry | rna-NM_001182095.1_ThermosaccDry | cds-NP_013309.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:555977-556870:+ | gene-YLR208W_VR1 | rna-NM_001182095.1_VR1 | cds-NP_013309.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:68920-69813:+ | gene-YLR208W_ZTW1 | rna-NM_001182095.1_ZTW1 | cds-NP_013309.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:530730-531623:+ | gene-YLR208W_Sparadoxus | rna-NM_001182095.1_Sparadoxus | cds-NP_013309.1_Sparadoxus | 91.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |