Gene name: SEC1
Reference locus (S288C): YDR164C
Gene biotype: protein_coding
Description: Sm-like protein involved in docking and fusion of exocytic vesicles; binds to assembled SNARE complexes at the membrane and stimulates membrane fusion; localization to sites of secretion (bud neck and bud tip) is dependent on SNARE function; interacts directly with essential exocyst subunit Sec6p
Top 10 interactors (score): SEC9 (0.999); SSO2 (0.999); SSO1 (0.999); SEC4 (0.997); SEC6 (0.996); SNC2 (0.995); SPO20 (0.995); VPS45 (0.993); VPS33 (0.991); SEC18 (0.99); SEC17 (0.988); YPT1 (0.985); EXO70 (0.984); MSO1 (0.984); YPT7 (0.983); SEC15 (0.982); SEC10 (0.976); SNC1 (0.968); SEC8 (0.967); VPS16 (0.967)
Homologues (species, bitscore): STXBP2 (Homo sapiens, 203.4); Stxbp2 (Mus musculus, 216.5); stxbp2 (Danio rerio, 195.3); stxbp1 (Xenopus tropicalis, 192.6); Rop (Drosophila melanogaster, 176.8); unc-18 (Caenorhabditis elegans, 189.9); SEC1B (Arabidopsis thaliana, 136.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:753337-755511:- | gene-YDR164C_AKU4011 | rna-NM_001180471.1_AKU4011 | cds-NP_010448.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:371244-373418:+ | gene-YDR164C_BG1 | rna-NM_001180471.1_BG1 | cds-NP_010448.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:784834-787008:- | gene-YDR164C_Bruggeman | rna-NM_001180471.1_Bruggeman | cds-NP_010448.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:772109-774283:- | gene-YDR164C_CAT1 | rna-NM_001180471.1_CAT1 | cds-NP_010448.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:743704-745878:- | gene-YDR164C_CBS1585 | rna-NM_001180471.1_CBS1585 | cds-NP_010448.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:769897-772071:- | gene-YDR164C_CBS436 | rna-NM_001180471.1_CBS436 | cds-NP_010448.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:739154-741328:- | gene-YDR164C_CBS6412 | rna-NM_001180471.1_CBS6412 | cds-NP_010448.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:767602-769776:- | gene-YDR164C_CBS6413 | rna-NM_001180471.1_CBS6413 | cds-NP_010448.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:782703-784877:- | gene-YDR164C_CENPK1137D | rna-NM_001180471.1_CENPK1137D | cds-NP_010448.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:753163-755337:- | gene-YDR164C_EthanolRed | rna-NM_001180471.1_EthanolRed | cds-NP_010448.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:761375-763549:- | gene-YDR164C_FaliES1 | rna-NM_001180471.1_FaliES1 | cds-NP_010448.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000119.1:18713-20887:+ | gene-YDR164C_JAY291 | rna-NM_001180471.1_JAY291 | cds-NP_010448.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:770212-772386:- | gene-YDR164C_MUCL30387 | rna-NM_001180471.1_MUCL30387 | cds-NP_010448.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:758722-760896:- | gene-YDR164C_MUCL30388 | rna-NM_001180471.1_MUCL30388 | cds-NP_010448.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:745131-747305:- | gene-YDR164C_MUCL39482 | rna-NM_001180471.1_MUCL39482 | cds-NP_010448.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:682956-685130:- | gene-YDR164C_MUCL42920 | rna-NM_001180471.1_MUCL42920 | cds-NP_010448.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:781964-784138:- | gene-YDR164C_NCIM3186 | rna-NM_001180471.1_NCIM3186 | cds-NP_010448.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:744535-746709:- | gene-YDR164C_NCYC1407 | rna-NM_001180471.1_NCYC1407 | cds-NP_010448.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:763729-765903:- | gene-YDR164C_PE2H3 | rna-NM_001180471.1_PE2H3 | cds-NP_010448.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:763034-765208:- | gene-YDR164C_PE2H4 | rna-NM_001180471.1_PE2H4 | cds-NP_010448.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:782041-784215:- | gene-YDR164C_S288C | rna-NM_001180471.1_S288C | cds-NP_010448.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:129240-131414:- | gene-YDR164C_SA1 | rna-NM_001180471.1_SA1 | cds-NP_010448.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:759510-761684:- | gene-YDR164C_ThermosaccDry | rna-NM_001180471.1_ThermosaccDry | cds-NP_010448.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:774498-776672:- | gene-YDR164C_VR1 | rna-NM_001180471.1_VR1 | cds-NP_010448.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:22261-24435:- | gene-YDR164C_ZTW1 | rna-NM_001180471.1_ZTW1 | cds-NP_010448.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:765735-767909:- | gene-YDR164C_Sparadoxus | rna-NM_001180471.1_Sparadoxus | cds-NP_010448.1_Sparadoxus | 90.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |