Gene name: SDS3
Reference locus (S288C): YIL084C
Gene biotype: protein_coding
Description: Transcriptional regulatory protein SDS3; Component of the Rpd3L histone deacetylase complex; required for its structural integrity and catalytic activity, involved in transcriptional silencing and required for sporulation; relocalizes to the cytosol in response to hypoxia; cells defective in SDS3 display pleiotropic phenotypes
Top 10 interactors (score): RPD3 (0.999); SIN3 (0.999); RXT2 (0.998); PHO23 (0.998); CTI6 (0.997); SAP30 (0.995); DEP1 (0.995); UME1 (0.995); RXT3 (0.995); RCO1 (0.994); EAF3 (0.992); UME6 (0.986); ASH1 (0.984); HOS2 (0.966); HHT2 (0.95); TOD6 (0.949); SET3 (0.946); SNT1 (0.942); DOT6 (0.939); SIF2 (0.936)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:204379-205362:- | gene-YIL084C_AKU4011 | rna-NM_001179432.1_AKU4011 | cds-NP_012182.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000164.1:66315-67298:- | gene-YIL084C_BG1 | rna-NM_001179432.1_BG1 | cds-NP_012182.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:209548-210531:- | gene-YIL084C_Bruggeman | rna-NM_001179432.1_Bruggeman | cds-NP_012182.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:200080-201063:- | gene-YIL084C_CAT1 | rna-NM_001179432.1_CAT1 | cds-NP_012182.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:203950-204933:- | gene-YIL084C_CBS1585 | rna-NM_001179432.1_CBS1585 | cds-NP_012182.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:194572-195555:- | gene-YIL084C_CBS436 | rna-NM_001179432.1_CBS436 | cds-NP_012182.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:201327-202310:- | gene-YIL084C_CBS6412 | rna-NM_001179432.1_CBS6412 | cds-NP_012182.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:195870-196853:- | gene-YIL084C_CBS6413 | rna-NM_001179432.1_CBS6413 | cds-NP_012182.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:193612-194595:- | gene-YIL084C_CENPK1137D | rna-NM_001179432.1_CENPK1137D | cds-NP_012182.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:188674-189657:- | gene-YIL084C_EthanolRed | rna-NM_001179432.1_EthanolRed | cds-NP_012182.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:205580-206563:- | gene-YIL084C_FaliES1 | rna-NM_001179432.1_FaliES1 | cds-NP_012182.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000025.1:22939-23922:+ | gene-YIL084C_JAY291 | rna-NM_001179432.1_JAY291 | cds-NP_012182.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:208013-208996:- | gene-YIL084C_MUCL30387 | rna-NM_001179432.1_MUCL30387 | cds-NP_012182.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:204622-205605:- | gene-YIL084C_MUCL30388 | rna-NM_001179432.1_MUCL30388 | cds-NP_012182.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:204797-205780:- | gene-YIL084C_MUCL39482 | rna-NM_001179432.1_MUCL39482 | cds-NP_012182.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:208159-209142:- | gene-YIL084C_MUCL42920 | rna-NM_001179432.1_MUCL42920 | cds-NP_012182.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:202276-203259:- | gene-YIL084C_NCIM3186 | rna-NM_001179432.1_NCIM3186 | cds-NP_012182.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:209074-210057:- | gene-YIL084C_NCYC1407 | rna-NM_001179432.1_NCYC1407 | cds-NP_012182.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:203061-204044:- | gene-YIL084C_PE2H3 | rna-NM_001179432.1_PE2H3 | cds-NP_012182.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:197435-198418:- | gene-YIL084C_PE2H4 | rna-NM_001179432.1_PE2H4 | cds-NP_012182.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:202276-203259:- | gene-YIL084C_S288C | rna-NM_001179432.1_S288C | cds-NP_012182.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000111.1:2386-3369:+ | gene-YIL084C_SA1 | rna-NM_001179432.1_SA1 | cds-NP_012182.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:204245-205228:- | gene-YIL084C_ThermosaccDry | rna-NM_001179432.1_ThermosaccDry | cds-NP_012182.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:201126-202109:- | gene-YIL084C_VR1 | rna-NM_001179432.1_VR1 | cds-NP_012182.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:178510-179493:- | gene-YIL084C_ZTW1 | rna-NM_001179432.1_ZTW1 | cds-NP_012182.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:202283-203266:- | gene-YIL084C_Sparadoxus | rna-NM_001179432.1_Sparadoxus | cds-NP_012182.1_Sparadoxus | 90.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |