Gene name: SDS23
Reference locus (S288C): YGL056C
Gene biotype: protein_coding
Description: Protein involved in cell separation during budding; one of two S. cerevisiae homologs (Sds23p and Sds24p) of the S. pombe Sds23 protein, which is implicated in APC/cyclosome regulation; SDS23 has a paralog, SDS24, that arose from the whole genome duplication
Top 10 interactors (score): VPS34 (0.906); VPS15 (0.901); VPS30 (0.901); SIP2 (0.867); SIP1 (0.867); CRP1 (0.867); MDG1 (0.867); GAL83 (0.867); SNF1 (0.828); YPL150W (0.798); KIN4 (0.798); FRK1 (0.798); SDS22 (0.776); THI22 (0.717); ATG1 (0.697); SIT4 (0.677); SAP155 (0.634); GLC7 (0.633); PRR1 (0.63); GUA1 (0.616)
Homologues (species, bitscore): prkag3 (Xenopus tropicalis, 50.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:399021-400604:- | gene-YGL056C_AKU4011 | rna-NM_001180921.2_AKU4011 | cds-NP_011459.2_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:4784-6367:+ | gene-YGL056C_BG1 | rna-NM_001180921.2_BG1 | cds-NP_011459.2_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:401499-403082:- | gene-YGL056C_Bruggeman | rna-NM_001180921.2_Bruggeman | cds-NP_011459.2_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:398494-400077:- | gene-YGL056C_CAT1 | rna-NM_001180921.2_CAT1 | cds-NP_011459.2_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:402566-404149:- | gene-YGL056C_CBS1585 | rna-NM_001180921.2_CBS1585 | cds-NP_011459.2_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:396703-398286:- | gene-YGL056C_CBS436 | rna-NM_001180921.2_CBS436 | cds-NP_011459.2_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:386725-388308:- | gene-YGL056C_CBS6412 | rna-NM_001180921.2_CBS6412 | cds-NP_011459.2_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:396651-398234:- | gene-YGL056C_CBS6413 | rna-NM_001180921.2_CBS6413 | cds-NP_011459.2_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:396222-397805:- | gene-YGL056C_CENPK1137D | rna-NM_001180921.2_CENPK1137D | cds-NP_011459.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:388091-389674:- | gene-YGL056C_EthanolRed | rna-NM_001180921.2_EthanolRed | cds-NP_011459.2_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:390653-392236:- | gene-YGL056C_FaliES1 | rna-NM_001180921.2_FaliES1 | cds-NP_011459.2_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000144.1:4030-5613:+ | gene-YGL056C_JAY291 | rna-NM_001180921.2_JAY291 | cds-NP_011459.2_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:398694-400277:- | gene-YGL056C_MUCL30387 | rna-NM_001180921.2_MUCL30387 | cds-NP_011459.2_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:401742-403325:- | gene-YGL056C_MUCL30388 | rna-NM_001180921.2_MUCL30388 | cds-NP_011459.2_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:398874-400457:- | gene-YGL056C_MUCL39482 | rna-NM_001180921.2_MUCL39482 | cds-NP_011459.2_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:173652-175235:+ | gene-YGL056C_MUCL42920 | rna-NM_001180921.2_MUCL42920 | cds-NP_011459.2_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:396035-397618:- | gene-YGL056C_NCIM3186 | rna-NM_001180921.2_NCIM3186 | cds-NP_011459.2_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:390407-391990:- | gene-YGL056C_NCYC1407 | rna-NM_001180921.2_NCYC1407 | cds-NP_011459.2_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:392061-393644:- | gene-YGL056C_PE2H3 | rna-NM_001180921.2_PE2H3 | cds-NP_011459.2_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:397111-398694:- | gene-YGL056C_PE2H4 | rna-NM_001180921.2_PE2H4 | cds-NP_011459.2_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:396035-397618:- | gene-YGL056C_S288C | rna-NM_001180921.2_S288C | cds-NP_011459.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000096.1:31202-32785:- | gene-YGL056C_SA1 | rna-NM_001180921.2_SA1 | cds-NP_011459.2_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:390904-392487:- | gene-YGL056C_ThermosaccDry | rna-NM_001180921.2_ThermosaccDry | cds-NP_011459.2_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:501288-502871:- | gene-YGL056C_VR1 | rna-NM_001180921.2_VR1 | cds-NP_011459.2_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:388269-389852:- | gene-YGL056C_ZTW1 | rna-NM_001180921.2_ZTW1 | cds-NP_011459.2_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:393882-395465:- | gene-YGL056C_Sparadoxus | rna-NM_001180921.2_Sparadoxus | cds-NP_011459.2_Sparadoxus | 91.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |