Gene name: SDS22
Reference locus (S288C): YKL193C
Gene biotype: protein_coding
Description: Regulatory subunit of the type 1 protein phosphatase (PP1) Glc7p; whether it functions as a positive or negative regulator of Glc7p is controversial; involved in the regulation of Glc7p nuclear localization and function; Belongs to the SDS22 family
Top 10 interactors (score): GLC7 (0.999); YPI1 (0.999); IPL1 (0.978); GAC1 (0.975); SIT4 (0.972); PPH3 (0.963); SHP1 (0.96); PPH21 (0.959); CDC55 (0.948); REG1 (0.943); CMP2 (0.939); CNA1 (0.939); PSY2 (0.938); GIP2 (0.938); GIP1 (0.936); PPZ1 (0.931); PSY4 (0.928); RRD2 (0.926); REG2 (0.925); CNB1 (0.925)
Homologues (species, bitscore): PPP1R7 (Homo sapiens, 237.3); Ppp1r7 (Mus musculus, 243.8); ppp1r7 (Danio rerio, 216.5); ppp1r7 (Xenopus tropicalis, 228.4); sds22 (Drosophila melanogaster, 190.7); T09A5.9 (Caenorhabditis elegans, 186.8); AT5G19680 (Arabidopsis thaliana, 163.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:65223-66239:- | gene-YKL193C_AKU4011 | rna-NM_001179759.1_AKU4011 | cds-NP_012728.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:42241-43257:- | gene-YKL193C_BG1 | rna-NM_001179759.1_BG1 | cds-NP_012728.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:82851-83867:- | gene-YKL193C_Bruggeman | rna-NM_001179759.1_Bruggeman | cds-NP_012728.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:78062-79078:- | gene-YKL193C_CAT1 | rna-NM_001179759.1_CAT1 | cds-NP_012728.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:77209-78225:- | gene-YKL193C_CBS1585 | rna-NM_001179759.1_CBS1585 | cds-NP_012728.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:76455-77471:- | gene-YKL193C_CBS436 | rna-NM_001179759.1_CBS436 | cds-NP_012728.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:62460-63476:- | gene-YKL193C_CBS6412 | rna-NM_001179759.1_CBS6412 | cds-NP_012728.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:77869-78885:- | gene-YKL193C_CBS6413 | rna-NM_001179759.1_CBS6413 | cds-NP_012728.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:78695-79711:- | gene-YKL193C_CENPK1137D | rna-NM_001179759.1_CENPK1137D | cds-NP_012728.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:76485-77501:- | gene-YKL193C_EthanolRed | rna-NM_001179759.1_EthanolRed | cds-NP_012728.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:76765-77781:- | gene-YKL193C_FaliES1 | rna-NM_001179759.1_FaliES1 | cds-NP_012728.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000006.2:76287-77303:- | gene-YKL193C_JAY291 | rna-NM_001179759.1_JAY291 | cds-NP_012728.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:85401-86417:- | gene-YKL193C_MUCL30387 | rna-NM_001179759.1_MUCL30387 | cds-NP_012728.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:79493-80509:- | gene-YKL193C_MUCL30388 | rna-NM_001179759.1_MUCL30388 | cds-NP_012728.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:77266-78282:- | gene-YKL193C_MUCL39482 | rna-NM_001179759.1_MUCL39482 | cds-NP_012728.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:80827-81843:- | gene-YKL193C_MUCL42920 | rna-NM_001179759.1_MUCL42920 | cds-NP_012728.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:78855-79871:- | gene-YKL193C_NCIM3186 | rna-NM_001179759.1_NCIM3186 | cds-NP_012728.1_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:77289-78305:- | gene-YKL193C_NCYC1407 | rna-NM_001179759.1_NCYC1407 | cds-NP_012728.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:84828-85844:- | gene-YKL193C_PE2H3 | rna-NM_001179759.1_PE2H3 | cds-NP_012728.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:81122-82138:- | gene-YKL193C_PE2H4 | rna-NM_001179759.1_PE2H4 | cds-NP_012728.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:78866-79882:- | gene-YKL193C_S288C | rna-NM_001179759.1_S288C | cds-NP_012728.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000113.1:12745-13761:- | gene-YKL193C_SA1 | rna-NM_001179759.1_SA1 | cds-NP_012728.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:77467-78483:- | gene-YKL193C_ThermosaccDry | rna-NM_001179759.1_ThermosaccDry | cds-NP_012728.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:76534-77550:- | gene-YKL193C_VR1 | rna-NM_001179759.1_VR1 | cds-NP_012728.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:76406-77422:- | gene-YKL193C_ZTW1 | rna-NM_001179759.1_ZTW1 | cds-NP_012728.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:90675-91691:- | gene-YKL193C_Sparadoxus | rna-NM_001179759.1_Sparadoxus | cds-NP_012728.1_Sparadoxus | 88.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |