SDP1 (YIL113W)


Gene profile

Gene name: SDP1
Reference locus (S288C): YIL113W
Gene biotype: protein_coding

Description: Stress-inducible dual-specificity MAP kinase phosphatase; negatively regulates Slt2p MAP kinase by direct dephosphorylation, diffuse localization under normal conditions shifts to punctate localization after heat shock; SDP1 has a paralog, MSG5, that arose from the whole genome duplication

Top 10 interactors (score): SLT2 (0.997); KDX1 (0.918); RLM1 (0.916); CMP2 (0.887); FUS3 (0.843); PTC5 (0.796); POL3 (0.789); CNA1 (0.788); KSS1 (0.778); PTP2 (0.776); YCH1 (0.751); MKK1 (0.744); PTC6 (0.739); HOG1 (0.738); YVH1 (0.717); KNS1 (0.713); OCA6 (0.701); MRPL50 (0.701); YMR1 (0.695); PTP1 (0.692)

Homologues (species, bitscore): DUSP14 (Homo sapiens, 75.9); Dusp14 (Mus musculus, 75.5); dusp14 (Danio rerio, 73.9); DUSP7 (Xenopus tropicalis, 67.8); puc (Drosophila melanogaster, 67.8); F26A3.4 (Caenorhabditis elegans, 60.8); MKP2 (Arabidopsis thaliana, 60.5)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005303.1:152039-152668:+ gene-YIL113W_AKU4011 rna-NM_001179461.1_AKU4011 cds-NP_012153.1_AKU4011 99.2 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000164.1:14966-15595:+ gene-YIL113W_BG1 rna-NM_001179461.1_BG1 cds-NP_012153.1_BG1 99.3 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005511.1:156670-157299:+ gene-YIL113W_Bruggeman rna-NM_001179461.1_Bruggeman cds-NP_012153.1_Bruggeman 99.8 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005527.1:148711-149340:+ gene-YIL113W_CAT1 rna-NM_001179461.1_CAT1 cds-NP_012153.1_CAT1 99.3 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005367.1:152298-152927:+ gene-YIL113W_CBS1585 rna-NM_001179461.1_CBS1585 cds-NP_012153.1_CBS1585 99.0 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005351.1:143210-143839:+ gene-YIL113W_CBS436 rna-NM_001179461.1_CBS436 cds-NP_012153.1_CBS436 99.8 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005335.1:149673-150302:+ gene-YIL113W_CBS6412 rna-NM_001179461.1_CBS6412 cds-NP_012153.1_CBS6412 99.2 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005319.1:143327-143956:+ gene-YIL113W_CBS6413 rna-NM_001179461.1_CBS6413 cds-NP_012153.1_CBS6413 99.0 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001530.1:142176-142805:+ gene-YIL113W_CENPK1137D rna-NM_001179461.1_CENPK1137D cds-NP_012153.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005479.1:137264-137893:+ gene-YIL113W_EthanolRed rna-NM_001179461.1_EthanolRed cds-NP_012153.1_EthanolRed 99.2 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005543.1:153263-153892:+ gene-YIL113W_FaliES1 rna-NM_001179461.1_FaliES1 cds-NP_012153.1_FaliES1 99.2 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000025.1:74657-75286:- gene-YIL113W_JAY291 rna-NM_001179461.1_JAY291 cds-NP_012153.1_JAY291 99.3 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005415.1:153514-154143:+ gene-YIL113W_MUCL30387 rna-NM_001179461.1_MUCL30387 cds-NP_012153.1_MUCL30387 99.3 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005447.1:152254-152883:+ gene-YIL113W_MUCL30388 rna-NM_001179461.1_MUCL30388 cds-NP_012153.1_MUCL30388 99.2 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005287.1:153142-153771:+ gene-YIL113W_MUCL39482 rna-NM_001179461.1_MUCL39482 cds-NP_012153.1_MUCL39482 99.0 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005431.1:156400-157029:+ gene-YIL113W_MUCL42920 rna-NM_001179461.1_MUCL42920 cds-NP_012153.1_MUCL42920 99.3 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011818.1:150559-151188:+ gene-YIL113W_NCIM3186 rna-NM_001179461.1_NCIM3186 cds-NP_012153.1_NCIM3186 99.3 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005271.1:157186-157815:+ gene-YIL113W_NCYC1407 rna-NM_001179461.1_NCYC1407 cds-NP_012153.1_NCYC1407 99.2 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994148.1:151676-152305:+ gene-YIL113W_PE2H3 rna-NM_001179461.1_PE2H3 cds-NP_012153.1_PE2H3 99.3 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999880.1:145709-146338:+ gene-YIL113W_PE2H4 rna-NM_001179461.1_PE2H4 cds-NP_012153.1_PE2H4 99.6 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001141.2:150559-151188:+ gene-YIL113W_S288C rna-NM_001179461.1_S288C cds-NP_012153.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000058.1:32171-32800:- gene-YIL113W_SA1 rna-NM_001179461.1_SA1 cds-NP_012153.1_SA1 99.3 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005495.1:151920-152549:+ gene-YIL113W_ThermosaccDry rna-NM_001179461.1_ThermosaccDry cds-NP_012153.1_ThermosaccDry 99.2 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005463.1:148826-149455:+ gene-YIL113W_VR1 rna-NM_001179461.1_VR1 cds-NP_012153.1_VR1 99.8 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000019.1:126863-127492:+ gene-YIL113W_ZTW1 rna-NM_001179461.1_ZTW1 cds-NP_012153.1_ZTW1 99.2 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047495.1:144686-145315:+ gene-YIL113W_Sparadoxus rna-NM_001179461.1_Sparadoxus cds-NP_012153.1_Sparadoxus 86.8 100.0 Verified 1 1 1 False True False False False

Additional files