Gene name: SDH6
Reference locus (S288C): YDR379C-A
Gene biotype: protein_coding
Description: Mitochondrial protein involved in assembly of succinate dehydrogenase; has a role in maturation of the Sdh2p subunit; member of the LYR protein family; mutations in human ortholog SDHAF1 are associated with infantile leukoencephalopathy
Top 10 interactors (score): SDH7 (0.976); SDH2 (0.964); SDH5 (0.944); SDH1 (0.917); MZM1 (0.893); ISD11 (0.888); SDH4 (0.817); JAC1 (0.77); LIP5 (0.756); ACP1 (0.753); TCM62 (0.744); RPB10 (0.671); SDH3 (0.671); FRD1 (0.639); ISA2 (0.613); ATP12 (0.602); YDR461C-A (0.601); SRY1 (0.599); ISU1 (0.594); NFU1 (0.578)
Homologues (species, bitscore): AT2G39725 (Arabidopsis thaliana, 55.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:568671-568910:- | gene-YDR379C-A_AKU4011 | rna-NM_001184471.3_AKU4011 | cds-NP_076888.3_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:51970-52209:- | gene-YDR379C-A_BG1 | rna-NM_001184471.3_BG1 | cds-NP_076888.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1204054-1204293:- | gene-YDR379C-A_Bruggeman | rna-NM_001184471.3_Bruggeman | cds-NP_076888.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1182662-1182901:- | gene-YDR379C-A_CAT1 | rna-NM_001184471.3_CAT1 | cds-NP_076888.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1168163-1168402:- | gene-YDR379C-A_CBS1585 | rna-NM_001184471.3_CBS1585 | cds-NP_076888.3_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1186715-1186954:- | gene-YDR379C-A_CBS436 | rna-NM_001184471.3_CBS436 | cds-NP_076888.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1164400-1164639:- | gene-YDR379C-A_CBS6412 | rna-NM_001184471.3_CBS6412 | cds-NP_076888.3_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1186290-1186529:- | gene-YDR379C-A_CBS6413 | rna-NM_001184471.3_CBS6413 | cds-NP_076888.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1231930-1232169:- | gene-YDR379C-A_CENPK1137D | rna-NM_001184471.3_CENPK1137D | cds-NP_076888.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1177818-1178057:- | gene-YDR379C-A_EthanolRed | rna-NM_001184471.3_EthanolRed | cds-NP_076888.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1181105-1181344:- | gene-YDR379C-A_FaliES1 | rna-NM_001184471.3_FaliES1 | cds-NP_076888.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000057.1:9736-9975:+ | gene-YDR379C-A_JAY291 | rna-NM_001184471.3_JAY291 | cds-NP_076888.3_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1187373-1187612:- | gene-YDR379C-A_MUCL30387 | rna-NM_001184471.3_MUCL30387 | cds-NP_076888.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1169981-1170220:- | gene-YDR379C-A_MUCL30388 | rna-NM_001184471.3_MUCL30388 | cds-NP_076888.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1159714-1159953:- | gene-YDR379C-A_MUCL39482 | rna-NM_001184471.3_MUCL39482 | cds-NP_076888.3_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1102105-1102344:- | gene-YDR379C-A_MUCL42920 | rna-NM_001184471.3_MUCL42920 | cds-NP_076888.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1233201-1233440:- | gene-YDR379C-A_NCIM3186 | rna-NM_001184471.3_NCIM3186 | cds-NP_076888.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1173685-1173924:- | gene-YDR379C-A_NCYC1407 | rna-NM_001184471.3_NCYC1407 | cds-NP_076888.3_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1183769-1184008:- | gene-YDR379C-A_PE2H3 | rna-NM_001184471.3_PE2H3 | cds-NP_076888.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1189350-1189589:- | gene-YDR379C-A_PE2H4 | rna-NM_001184471.3_PE2H4 | cds-NP_076888.3_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1233278-1233517:- | gene-YDR379C-A_S288C | rna-NM_001184471.3_S288C | cds-NP_076888.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000072.1:52051-52290:- | gene-YDR379C-A_SA1 | rna-NM_001184471.3_SA1 | cds-NP_076888.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1185386-1185625:- | gene-YDR379C-A_ThermosaccDry | rna-NM_001184471.3_ThermosaccDry | cds-NP_076888.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:612729-612968:- | gene-YDR379C-A_VR1 | rna-NM_001184471.3_VR1 | cds-NP_076888.3_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:228215-228454:- | gene-YDR379C-A_ZTW1 | rna-NM_001184471.3_ZTW1 | cds-NP_076888.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1179958-1180197:- | gene-YDR379C-A_Sparadoxus | rna-NM_001184471.3_Sparadoxus | cds-NP_076888.3_Sparadoxus | 90.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |