Gene name: SDH4
Reference locus (S288C): YDR178W
Gene biotype: protein_coding
Description: Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial; Membrane anchor subunit of succinate dehydrogenase (SDH); involved in coupling the oxidation of succinate to the transfer of electrons to ubiquinone as part of the TCA cycle and the mitochondrial respiratory chain; has similarity to human SDH subunit D (SDHD), which is implicated in paraganglioma
Top 10 interactors (score): SDH2 (0.999); SDH1 (0.999); SDH3 (0.999); RIP1 (0.995); FUM1 (0.994); NDI1 (0.987); COR1 (0.986); CYT1 (0.985); SHH3 (0.983); KGD2 (0.979); QCR7 (0.975); YJL045W (0.968); QCR8 (0.964); QCR2 (0.963); COB (0.96); QCR10 (0.954); QCR9 (0.953); LSC1 (0.935); QCR6 (0.925); NDE1 (0.92)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:786477-787022:+ | gene-YDR178W_AKU4011 | rna-NM_001180485.1_AKU4011 | cds-NP_010463.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:338776-339321:- | gene-YDR178W_BG1 | rna-NM_001180485.1_BG1 | cds-NP_010463.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:818899-819444:+ | gene-YDR178W_Bruggeman | rna-NM_001180485.1_Bruggeman | cds-NP_010463.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:806145-806690:+ | gene-YDR178W_CAT1 | rna-NM_001180485.1_CAT1 | cds-NP_010463.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:776844-777389:+ | gene-YDR178W_CBS1585 | rna-NM_001180485.1_CBS1585 | cds-NP_010463.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:805826-806371:+ | gene-YDR178W_CBS436 | rna-NM_001180485.1_CBS436 | cds-NP_010463.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:773649-774194:+ | gene-YDR178W_CBS6412 | rna-NM_001180485.1_CBS6412 | cds-NP_010463.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:804192-804737:+ | gene-YDR178W_CBS6413 | rna-NM_001180485.1_CBS6413 | cds-NP_010463.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:816756-817301:+ | gene-YDR178W_CENPK1137D | rna-NM_001180485.1_CENPK1137D | cds-NP_010463.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:787245-787790:+ | gene-YDR178W_EthanolRed | rna-NM_001180485.1_EthanolRed | cds-NP_010463.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:795457-796002:+ | gene-YDR178W_FaliES1 | rna-NM_001180485.1_FaliES1 | cds-NP_010463.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000068.1:53361-53906:- | gene-YDR178W_JAY291 | rna-NM_001180485.1_JAY291 | cds-NP_010463.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:804545-805090:+ | gene-YDR178W_MUCL30387 | rna-NM_001180485.1_MUCL30387 | cds-NP_010463.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:792787-793332:+ | gene-YDR178W_MUCL30388 | rna-NM_001180485.1_MUCL30388 | cds-NP_010463.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:778291-778836:+ | gene-YDR178W_MUCL39482 | rna-NM_001180485.1_MUCL39482 | cds-NP_010463.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:716989-717534:+ | gene-YDR178W_MUCL42920 | rna-NM_001180485.1_MUCL42920 | cds-NP_010463.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:817873-818418:+ | gene-YDR178W_NCIM3186 | rna-NM_001180485.1_NCIM3186 | cds-NP_010463.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:781424-781969:+ | gene-YDR178W_NCYC1407 | rna-NM_001180485.1_NCYC1407 | cds-NP_010463.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:798150-798695:+ | gene-YDR178W_PE2H3 | rna-NM_001180485.1_PE2H3 | cds-NP_010463.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:797455-798000:+ | gene-YDR178W_PE2H4 | rna-NM_001180485.1_PE2H4 | cds-NP_010463.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:817950-818495:+ | gene-YDR178W_S288C | rna-NM_001180485.1_S288C | cds-NP_010463.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:163661-164206:+ | gene-YDR178W_SA1 | rna-NM_001180485.1_SA1 | cds-NP_010463.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:793612-794157:+ | gene-YDR178W_ThermosaccDry | rna-NM_001180485.1_ThermosaccDry | cds-NP_010463.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:808840-809385:+ | gene-YDR178W_VR1 | rna-NM_001180485.1_VR1 | cds-NP_010463.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:56323-56868:+ | gene-YDR178W_ZTW1 | rna-NM_001180485.1_ZTW1 | cds-NP_010463.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:798734-799279:+ | gene-YDR178W_Sparadoxus | rna-NM_001180485.1_Sparadoxus | cds-NP_010463.1_Sparadoxus | 90.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |