Gene name: SDH2
Reference locus (S288C): YLL041C
Gene biotype: protein_coding
Description: Iron-sulfur protein subunit of succinate dehydrogenase; the complex couples the oxidation of succinate to the transfer of electrons to ubiquinone as part of the TCA cycle and the mitochondrial respiratory chain; other members are Sdh1p, Sdh3p, and Sdh4p
Top 10 interactors (score): SDH3 (0.999); SDH4 (0.999); YJL045W (0.999); LSC1 (0.999); RIP1 (0.999); CYT1 (0.999); QCR2 (0.999); SDH1 (0.999); QCR7 (0.999); SHH3 (0.999); COR1 (0.998); COX4 (0.998); NDI1 (0.996); KGD1 (0.994); KGD2 (0.993); ATP4 (0.993); FUM1 (0.99); QCR6 (0.989); ATP7 (0.988); QCR9 (0.987)
Homologues (species, bitscore): SDHB (Homo sapiens, 380.9); Sdhb (Mus musculus, 372.5); sdhb (Danio rerio, 375.6); sdhb (Xenopus tropicalis, 376.3); SdhB (Drosophila melanogaster, 375.9); sdhb-1 (Caenorhabditis elegans, 343.2); SDH2-1 (Arabidopsis thaliana, 332.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:40287-41087:- | gene-YLL041C_AKU4011 | rna-NM_001181861.1_AKU4011 | cds-NP_013059.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:4229-5029:- | gene-YLL041C_BG1 | rna-NM_001181861.1_BG1 | cds-NP_013059.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:49631-50431:- | gene-YLL041C_Bruggeman | rna-NM_001181861.1_Bruggeman | cds-NP_013059.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:51164-51964:- | gene-YLL041C_CAT1 | rna-NM_001181861.1_CAT1 | cds-NP_013059.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:48194-48994:- | gene-YLL041C_CBS1585 | rna-NM_001181861.1_CBS1585 | cds-NP_013059.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:38188-38988:- | gene-YLL041C_CBS436 | rna-NM_001181861.1_CBS436 | cds-NP_013059.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:47856-48656:- | gene-YLL041C_CBS6412 | rna-NM_001181861.1_CBS6412 | cds-NP_013059.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:47983-48783:- | gene-YLL041C_CBS6413 | rna-NM_001181861.1_CBS6413 | cds-NP_013059.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:38111-38911:- | gene-YLL041C_CENPK1137D | rna-NM_001181861.1_CENPK1137D | cds-NP_013059.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:40909-41709:- | gene-YLL041C_EthanolRed | rna-NM_001181861.1_EthanolRed | cds-NP_013059.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:40222-41022:- | gene-YLL041C_FaliES1 | rna-NM_001181861.1_FaliES1 | cds-NP_013059.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000145.1:5233-6033:- | gene-YLL041C_JAY291 | rna-NM_001181861.1_JAY291 | cds-NP_013059.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:47929-48729:- | gene-YLL041C_MUCL30387 | rna-NM_001181861.1_MUCL30387 | cds-NP_013059.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:51923-52723:- | gene-YLL041C_MUCL30388 | rna-NM_001181861.1_MUCL30388 | cds-NP_013059.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:48197-48997:- | gene-YLL041C_MUCL39482 | rna-NM_001181861.1_MUCL39482 | cds-NP_013059.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:48502-49302:- | gene-YLL041C_MUCL42920 | rna-NM_001181861.1_MUCL42920 | cds-NP_013059.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:53105-53905:- | gene-YLL041C_NCIM3186 | rna-NM_001181861.1_NCIM3186 | cds-NP_013059.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:40062-40862:- | gene-YLL041C_NCYC1407 | rna-NM_001181861.1_NCYC1407 | cds-NP_013059.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:46749-47549:- | gene-YLL041C_PE2H3 | rna-NM_001181861.1_PE2H3 | cds-NP_013059.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:46557-47357:- | gene-YLL041C_PE2H4 | rna-NM_001181861.1_PE2H4 | cds-NP_013059.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:53131-53931:- | gene-YLL041C_S288C | rna-NM_001181861.1_S288C | cds-NP_013059.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000047.1:46424-47224:- | gene-YLL041C_SA1 | rna-NM_001181861.1_SA1 | cds-NP_013059.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:40728-41528:- | gene-YLL041C_ThermosaccDry | rna-NM_001181861.1_ThermosaccDry | cds-NP_013059.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:54325-55125:- | gene-YLL041C_VR1 | rna-NM_001181861.1_VR1 | cds-NP_013059.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:40052-40852:- | gene-YLL041C_ZTW1 | rna-NM_001181861.1_ZTW1 | cds-NP_013059.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:48676-49476:- | gene-YLL041C_Sparadoxus | rna-NM_001181861.1_Sparadoxus | cds-NP_013059.1_Sparadoxus | 92.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |