Gene name: SDD4
Reference locus (S288C): YPR022C
Gene biotype: protein_coding
Description: Zinc finger protein YPR022C; Putative transcription factor, as suggested by computational analysis; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus and is induced in response to the DNA-damaging agent MMS; overproduction of a truncation allele suppresses lethality due to expression of the dominant PET9 allele AAC2-A128P
Top 10 interactors (score): YGR067C (0.855); SDD2 (0.845); YBL081W (0.819); MRN1 (0.815); PUF2 (0.769); NSP1 (0.759); SDD3 (0.751); YBR016W (0.749); SDD1 (0.746); ASM4 (0.729); NRP1 (0.718); KSP1 (0.708); SAP30 (0.699); YOR200W (0.699); PGD1 (0.697); YKR075C (0.691); GLN3 (0.656); MRPL15 (0.65); MOD5 (0.65); CBK1 (0.646)
Homologues (species, bitscore): KLF16 (Homo sapiens, 55.8); Klf16 (Mus musculus, 53.5); LOC556200 (Danio rerio, 52.4); klf13 (Xenopus tropicalis, 53.9); CG7368 (Drosophila melanogaster, 61.6); egrh-3 (Caenorhabditis elegans, 52.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:575564-578956:- | gene-YPR022C_AKU4011 | rna-NM_001184119.1_AKU4011 | cds-NP_015347.1_AKU4011 | 99.1 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:318177-321569:+ | gene-YPR022C_BG1 | rna-NM_001184119.1_BG1 | cds-NP_015347.1_BG1 | 99.2 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:653226-656618:- | gene-YPR022C_Bruggeman | rna-NM_001184119.1_Bruggeman | cds-NP_015347.1_Bruggeman | 99.2 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:696725-700117:- | gene-YPR022C_CAT1 | rna-NM_001184119.1_CAT1 | cds-NP_015347.1_CAT1 | 99.4 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:579250-582642:- | gene-YPR022C_CBS1585 | rna-NM_001184119.1_CBS1585 | cds-NP_015347.1_CBS1585 | 99.2 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:593600-597028:- | gene-YPR022C_CBS436 | rna-NM_001184119.1_CBS436 | cds-NP_015347.1_CBS436 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:582999-586391:- | gene-YPR022C_CBS6412 | rna-NM_001184119.1_CBS6412 | cds-NP_015347.1_CBS6412 | 99.1 | 99.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:575714-579106:- | gene-YPR022C_CBS6413 | rna-NM_001184119.1_CBS6413 | cds-NP_015347.1_CBS6413 | 99.2 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:603884-607285:- | gene-YPR022C_CENPK1137D | rna-NM_001184119.1_CENPK1137D | cds-NP_015347.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:573497-576889:- | gene-YPR022C_EthanolRed | rna-NM_001184119.1_EthanolRed | cds-NP_015347.1_EthanolRed | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:581299-584691:- | gene-YPR022C_FaliES1 | rna-NM_001184119.1_FaliES1 | cds-NP_015347.1_FaliES1 | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000116.1:42732-46136:+ | gene-YPR022C_JAY291 | rna-NM_001184119.1_JAY291 | cds-NP_015347.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:594446-597838:- | gene-YPR022C_MUCL30387 | rna-NM_001184119.1_MUCL30387 | cds-NP_015347.1_MUCL30387 | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:593099-596503:- | gene-YPR022C_MUCL30388 | rna-NM_001184119.1_MUCL30388 | cds-NP_015347.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:572491-575901:- | gene-YPR022C_MUCL39482 | rna-NM_001184119.1_MUCL39482 | cds-NP_015347.1_MUCL39482 | 98.5 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:633824-637216:- | gene-YPR022C_MUCL42920 | rna-NM_001184119.1_MUCL42920 | cds-NP_015347.1_MUCL42920 | 99.5 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:603894-607295:- | gene-YPR022C_NCIM3186 | rna-NM_001184119.1_NCIM3186 | cds-NP_015347.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:580438-583830:- | gene-YPR022C_NCYC1407 | rna-NM_001184119.1_NCYC1407 | cds-NP_015347.1_NCYC1407 | 99.1 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:587169-590561:- | gene-YPR022C_PE2H3 | rna-NM_001184119.1_PE2H3 | cds-NP_015347.1_PE2H3 | 99.0 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:586787-590191:- | gene-YPR022C_PE2H4 | rna-NM_001184119.1_PE2H4 | cds-NP_015347.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:603911-607312:- | gene-YPR022C_S288C | rna-NM_001184119.1_S288C | cds-NP_015347.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000026.1:92995-96399:+ | gene-YPR022C_SA1 | rna-NM_001184119.1_SA1 | cds-NP_015347.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:581101-584493:- | gene-YPR022C_ThermosaccDry | rna-NM_001184119.1_ThermosaccDry | cds-NP_015347.1_ThermosaccDry | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:597341-600742:- | gene-YPR022C_VR1 | rna-NM_001184119.1_VR1 | cds-NP_015347.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:580406-583798:- | gene-YPR022C_ZTW1 | rna-NM_001184119.1_ZTW1 | cds-NP_015347.1_ZTW1 | 99.4 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:580574-583939:- | gene-YPR022C_Sparadoxus | rna-NM_001184119.1_Sparadoxus | cds-NP_015347.1_Sparadoxus | 89.6 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |