SDD3 (YOL098C)


Gene profile

Gene name: SDD3
Reference locus (S288C): YOL098C
Gene biotype: protein_coding

Description: Uncharacterized protein YOL098C; Putative metalloprotease; overproduction suppresses lethality due to expression of the dominant PET9 allele AAC2-A128P

Top 10 interactors (score): SDD2 (0.9); SDD1 (0.813); SDD4 (0.751); LSO2 (0.749); LSO1 (0.749); YLR126C (0.715); YGR266W (0.711); VOA1 (0.695); GCD11 (0.674); TPT1 (0.66); RPL23A (0.651); STE24 (0.618); IZH4 (0.617); YPK1 (0.613); YPK2 (0.613); MCD1 (0.579); CLD1 (0.57); YEF3 (0.552); PET9 (0.551); ARP9 (0.528)

Homologues (species, bitscore): PITRM1 (Homo sapiens, 95.9); Pitrm1 (Mus musculus, 87.0); pitrm1 (Danio rerio, 89.4); pitrm1 (Xenopus tropicalis, 84.7); CG3107 (Drosophila melanogaster, 86.3); C05D11.1 (Caenorhabditis elegans, 332.4); PREP1 (Arabidopsis thaliana, 89.0)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005309.1:116042-119155:- gene-YOL098C_AKU4011 rna-NM_001183352.1_AKU4011 cds-NP_014543.1_AKU4011 99.7 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000172.1:81156-84269:- gene-YOL098C_BG1 rna-NM_001183352.1_BG1 cds-NP_014543.1_BG1 99.6 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005517.1:117623-120736:- gene-YOL098C_Bruggeman rna-NM_001183352.1_Bruggeman cds-NP_014543.1_Bruggeman 99.8 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005533.1:116505-119618:- gene-YOL098C_CAT1 rna-NM_001183352.1_CAT1 cds-NP_014543.1_CAT1 99.6 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005373.1:110481-113594:- gene-YOL098C_CBS1585 rna-NM_001183352.1_CBS1585 cds-NP_014543.1_CBS1585 99.7 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005357.1:115762-118875:- gene-YOL098C_CBS436 rna-NM_001183352.1_CBS436 cds-NP_014543.1_CBS436 99.5 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005341.1:110643-113756:- gene-YOL098C_CBS6412 rna-NM_001183352.1_CBS6412 cds-NP_014543.1_CBS6412 99.6 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005325.1:117344-120457:- gene-YOL098C_CBS6413 rna-NM_001183352.1_CBS6413 cds-NP_014543.1_CBS6413 99.7 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001536.1:126689-129802:- gene-YOL098C_CENPK1137D rna-NM_001183352.1_CENPK1137D cds-NP_014543.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005485.1:113645-116758:- gene-YOL098C_EthanolRed rna-NM_001183352.1_EthanolRed cds-NP_014543.1_EthanolRed 99.7 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005549.1:115972-119085:- gene-YOL098C_FaliES1 rna-NM_001183352.1_FaliES1 cds-NP_014543.1_FaliES1 99.7 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000160.1:24383-27496:+ gene-YOL098C_JAY291 rna-NM_001183352.1_JAY291 cds-NP_014543.1_JAY291 99.6 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005421.1:121827-124940:- gene-YOL098C_MUCL30387 rna-NM_001183352.1_MUCL30387 cds-NP_014543.1_MUCL30387 99.7 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005453.1:125008-128121:- gene-YOL098C_MUCL30388 rna-NM_001183352.1_MUCL30388 cds-NP_014543.1_MUCL30388 99.8 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005293.1:118403-121516:- gene-YOL098C_MUCL39482 rna-NM_001183352.1_MUCL39482 cds-NP_014543.1_MUCL39482 99.7 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005437.1:134175-137288:- gene-YOL098C_MUCL42920 rna-NM_001183352.1_MUCL42920 cds-NP_014543.1_MUCL42920 99.6 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011824.1:132614-135727:- gene-YOL098C_NCIM3186 rna-NM_001183352.1_NCIM3186 cds-NP_014543.1_NCIM3186 99.4 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005277.1:124999-128112:- gene-YOL098C_NCYC1407 rna-NM_001183352.1_NCYC1407 cds-NP_014543.1_NCYC1407 99.6 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994154.1:108300-111413:- gene-YOL098C_PE2H3 rna-NM_001183352.1_PE2H3 cds-NP_014543.1_PE2H3 99.6 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999886.1:119280-122393:- gene-YOL098C_PE2H4 rna-NM_001183352.1_PE2H4 cds-NP_014543.1_PE2H4 99.5 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001147.6:132725-135838:- gene-YOL098C_S288C rna-NM_001183352.1_S288C cds-NP_014543.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000001.1:100602-103715:- gene-YOL098C_SA1 rna-NM_001183352.1_SA1 cds-NP_014543.1_SA1 99.7 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005501.1:114980-118093:- gene-YOL098C_ThermosaccDry rna-NM_001183352.1_ThermosaccDry cds-NP_014543.1_ThermosaccDry 99.7 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005469.1:115549-118662:- gene-YOL098C_VR1 rna-NM_001183352.1_VR1 cds-NP_014543.1_VR1 99.6 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000031.1:114680-117793:- gene-YOL098C_ZTW1 rna-NM_001183352.1_ZTW1 cds-NP_014543.1_ZTW1 99.7 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047501.1:118120-121233:- gene-YOL098C_Sparadoxus rna-NM_001183352.1_Sparadoxus cds-NP_014543.1_Sparadoxus 89.9 99.9 Verified 1 1 1 False True False False False

Additional files