Gene name: SDD3
Reference locus (S288C): YOL098C
Gene biotype: protein_coding
Description: Uncharacterized protein YOL098C; Putative metalloprotease; overproduction suppresses lethality due to expression of the dominant PET9 allele AAC2-A128P
Top 10 interactors (score): SDD2 (0.9); SDD1 (0.813); SDD4 (0.751); LSO2 (0.749); LSO1 (0.749); YLR126C (0.715); YGR266W (0.711); VOA1 (0.695); GCD11 (0.674); TPT1 (0.66); RPL23A (0.651); STE24 (0.618); IZH4 (0.617); YPK1 (0.613); YPK2 (0.613); MCD1 (0.579); CLD1 (0.57); YEF3 (0.552); PET9 (0.551); ARP9 (0.528)
Homologues (species, bitscore): PITRM1 (Homo sapiens, 95.9); Pitrm1 (Mus musculus, 87.0); pitrm1 (Danio rerio, 89.4); pitrm1 (Xenopus tropicalis, 84.7); CG3107 (Drosophila melanogaster, 86.3); C05D11.1 (Caenorhabditis elegans, 332.4); PREP1 (Arabidopsis thaliana, 89.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:116042-119155:- | gene-YOL098C_AKU4011 | rna-NM_001183352.1_AKU4011 | cds-NP_014543.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000172.1:81156-84269:- | gene-YOL098C_BG1 | rna-NM_001183352.1_BG1 | cds-NP_014543.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:117623-120736:- | gene-YOL098C_Bruggeman | rna-NM_001183352.1_Bruggeman | cds-NP_014543.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:116505-119618:- | gene-YOL098C_CAT1 | rna-NM_001183352.1_CAT1 | cds-NP_014543.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:110481-113594:- | gene-YOL098C_CBS1585 | rna-NM_001183352.1_CBS1585 | cds-NP_014543.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:115762-118875:- | gene-YOL098C_CBS436 | rna-NM_001183352.1_CBS436 | cds-NP_014543.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:110643-113756:- | gene-YOL098C_CBS6412 | rna-NM_001183352.1_CBS6412 | cds-NP_014543.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:117344-120457:- | gene-YOL098C_CBS6413 | rna-NM_001183352.1_CBS6413 | cds-NP_014543.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:126689-129802:- | gene-YOL098C_CENPK1137D | rna-NM_001183352.1_CENPK1137D | cds-NP_014543.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:113645-116758:- | gene-YOL098C_EthanolRed | rna-NM_001183352.1_EthanolRed | cds-NP_014543.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:115972-119085:- | gene-YOL098C_FaliES1 | rna-NM_001183352.1_FaliES1 | cds-NP_014543.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000160.1:24383-27496:+ | gene-YOL098C_JAY291 | rna-NM_001183352.1_JAY291 | cds-NP_014543.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:121827-124940:- | gene-YOL098C_MUCL30387 | rna-NM_001183352.1_MUCL30387 | cds-NP_014543.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:125008-128121:- | gene-YOL098C_MUCL30388 | rna-NM_001183352.1_MUCL30388 | cds-NP_014543.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:118403-121516:- | gene-YOL098C_MUCL39482 | rna-NM_001183352.1_MUCL39482 | cds-NP_014543.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:134175-137288:- | gene-YOL098C_MUCL42920 | rna-NM_001183352.1_MUCL42920 | cds-NP_014543.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:132614-135727:- | gene-YOL098C_NCIM3186 | rna-NM_001183352.1_NCIM3186 | cds-NP_014543.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:124999-128112:- | gene-YOL098C_NCYC1407 | rna-NM_001183352.1_NCYC1407 | cds-NP_014543.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:108300-111413:- | gene-YOL098C_PE2H3 | rna-NM_001183352.1_PE2H3 | cds-NP_014543.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:119280-122393:- | gene-YOL098C_PE2H4 | rna-NM_001183352.1_PE2H4 | cds-NP_014543.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:132725-135838:- | gene-YOL098C_S288C | rna-NM_001183352.1_S288C | cds-NP_014543.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:100602-103715:- | gene-YOL098C_SA1 | rna-NM_001183352.1_SA1 | cds-NP_014543.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:114980-118093:- | gene-YOL098C_ThermosaccDry | rna-NM_001183352.1_ThermosaccDry | cds-NP_014543.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:115549-118662:- | gene-YOL098C_VR1 | rna-NM_001183352.1_VR1 | cds-NP_014543.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:114680-117793:- | gene-YOL098C_ZTW1 | rna-NM_001183352.1_ZTW1 | cds-NP_014543.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:118120-121233:- | gene-YOL098C_Sparadoxus | rna-NM_001183352.1_Sparadoxus | cds-NP_014543.1_Sparadoxus | 89.9 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |