Gene name: SDD1
Reference locus (S288C): YEL057C
Gene biotype: protein_coding
Description: Uncharacterized protein YEL057C; Protein of unknown function; overproduction suppresses lethality due to expression of the dominant PET9 allele AAC2-A128P; may have a role in telomere maintenance; target of UME6 regulation
Top 10 interactors (score): SDD2 (0.896); SDD3 (0.813); RPL38 (0.812); RPS30B (0.809); RPL40B (0.808); RPL14A (0.806); RPL37A (0.805); RPS30A (0.805); RPS16A (0.805); RPS17B (0.804); RPS24A (0.802); RPS6B (0.802); ASC1 (0.801); RPS4B (0.8); RPL29 (0.8); RPS5 (0.8); RPL10 (0.8); RPS31 (0.8); RPL7A (0.8); RPL30 (0.8)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:39425-40126:- | gene-YEL057C_AKU4011 | rna-NM_001178872.1_AKU4011 | cds-NP_010857.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000075.1:40390-41091:+ | gene-YEL057C_BG1 | rna-NM_001178872.1_BG1 | cds-NP_010857.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:42937-43638:- | gene-YEL057C_Bruggeman | rna-NM_001178872.1_Bruggeman | cds-NP_010857.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:41367-42068:- | gene-YEL057C_CAT1 | rna-NM_001178872.1_CAT1 | cds-NP_010857.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:39372-40073:- | gene-YEL057C_CBS1585 | rna-NM_001178872.1_CBS1585 | cds-NP_010857.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:40425-41126:- | gene-YEL057C_CBS436 | rna-NM_001178872.1_CBS436 | cds-NP_010857.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:39624-40325:- | gene-YEL057C_CBS6412 | rna-NM_001178872.1_CBS6412 | cds-NP_010857.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:44266-44967:- | gene-YEL057C_CBS6413 | rna-NM_001178872.1_CBS6413 | cds-NP_010857.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:42860-43561:- | gene-YEL057C_CENPK1137D | rna-NM_001178872.1_CENPK1137D | cds-NP_010857.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:39183-39884:- | gene-YEL057C_EthanolRed | rna-NM_001178872.1_EthanolRed | cds-NP_010857.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:39446-40147:- | gene-YEL057C_FaliES1 | rna-NM_001178872.1_FaliES1 | cds-NP_010857.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000427.1:17909-18610:+ | gene-YEL057C_JAY291 | rna-NM_001178872.1_JAY291 | cds-NP_010857.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:43376-44077:- | gene-YEL057C_MUCL30387 | rna-NM_001178872.1_MUCL30387 | cds-NP_010857.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:39487-40188:- | gene-YEL057C_MUCL30388 | rna-NM_001178872.1_MUCL30388 | cds-NP_010857.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:38739-39440:- | gene-YEL057C_MUCL39482 | rna-NM_001178872.1_MUCL39482 | cds-NP_010857.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:43371-44072:- | gene-YEL057C_MUCL42920 | rna-NM_001178872.1_MUCL42920 | cds-NP_010857.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:45019-45720:- | gene-YEL057C_NCIM3186 | rna-NM_001178872.1_NCIM3186 | cds-NP_010857.1_NCIM3186 | 78.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:43834-44535:- | gene-YEL057C_NCYC1407 | rna-NM_001178872.1_NCYC1407 | cds-NP_010857.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:47846-48547:- | gene-YEL057C_PE2H3 | rna-NM_001178872.1_PE2H3 | cds-NP_010857.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:43756-44457:- | gene-YEL057C_PE2H4 | rna-NM_001178872.1_PE2H4 | cds-NP_010857.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:45020-45721:- | gene-YEL057C_S288C | rna-NM_001178872.1_S288C | cds-NP_010857.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000053.1:41181-41882:+ | gene-YEL057C_SA1 | rna-NM_001178872.1_SA1 | cds-NP_010857.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:39846-40547:- | gene-YEL057C_ThermosaccDry | rna-NM_001178872.1_ThermosaccDry | cds-NP_010857.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:39048-39749:- | gene-YEL057C_VR1 | rna-NM_001178872.1_VR1 | cds-NP_010857.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:38783-39483:- | gene-YEL057C_ZTW1 | rna-NM_001178872.1_ZTW1 | cds-NP_010857.1_ZTW1 | 99.5 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:43114-43815:- | gene-YEL057C_Sparadoxus | rna-NM_001178872.1_Sparadoxus | cds-NP_010857.1_Sparadoxus | 87.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |