Gene name: SDC1
Reference locus (S288C): YDR469W
Gene biotype: protein_coding
Description: COMPASS component SDC1; Subunit of the COMPASS (Set1C) complex; COMPASS methylates lysine 4 of histone H3 and is required in chromatin silencing at telomeres; contains a Dpy-30 domain that mediates interaction with Bre2p; similar to C. elegans and human DPY-30
Top 10 interactors (score): SET1 (0.999); BRE2 (0.999); SWD1 (0.999); SPP1 (0.999); SWD3 (0.999); SWD2 (0.998); SHG1 (0.996); SET2 (0.908); HTZ1 (0.89); RPS31 (0.841); UBI4 (0.841); RPL40A (0.84); RPL40B (0.84); BRE1 (0.782); SWR1 (0.781); JHD2 (0.779); LGE1 (0.771); HHT2 (0.724); HHT1 (0.721); VPS71 (0.711)
Homologues (species, bitscore): Dpy-30L1 (Drosophila melanogaster, 52.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1338935-1339462:+ | gene-YDR469W_AKU4011 | rna-NM_001180777.3_AKU4011 | cds-NP_010757.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:214041-214568:+ | gene-YDR469W_BG1 | rna-NM_001180777.3_BG1 | cds-NP_010757.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1370347-1370874:+ | gene-YDR469W_Bruggeman | rna-NM_001180777.3_Bruggeman | cds-NP_010757.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1347491-1348018:+ | gene-YDR469W_CAT1 | rna-NM_001180777.3_CAT1 | cds-NP_010757.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1333231-1333758:+ | gene-YDR469W_CBS1585 | rna-NM_001180777.3_CBS1585 | cds-NP_010757.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1352599-1353126:+ | gene-YDR469W_CBS436 | rna-NM_001180777.3_CBS436 | cds-NP_010757.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1328858-1329385:+ | gene-YDR469W_CBS6412 | rna-NM_001180777.3_CBS6412 | cds-NP_010757.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1351869-1352396:+ | gene-YDR469W_CBS6413 | rna-NM_001180777.3_CBS6413 | cds-NP_010757.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1397711-1398238:+ | gene-YDR469W_CENPK1137D | rna-NM_001180777.3_CENPK1137D | cds-NP_010757.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1342273-1342800:+ | gene-YDR469W_EthanolRed | rna-NM_001180777.3_EthanolRed | cds-NP_010757.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1345826-1346353:+ | gene-YDR469W_FaliES1 | rna-NM_001180777.3_FaliES1 | cds-NP_010757.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:44083-44610:+ | gene-YDR469W_JAY291 | rna-NM_001180777.3_JAY291 | cds-NP_010757.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1352839-1353366:+ | gene-YDR469W_MUCL30387 | rna-NM_001180777.3_MUCL30387 | cds-NP_010757.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1334861-1335388:+ | gene-YDR469W_MUCL30388 | rna-NM_001180777.3_MUCL30388 | cds-NP_010757.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1324715-1325242:+ | gene-YDR469W_MUCL39482 | rna-NM_001180777.3_MUCL39482 | cds-NP_010757.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1267515-1268042:+ | gene-YDR469W_MUCL42920 | rna-NM_001180777.3_MUCL42920 | cds-NP_010757.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1398938-1399465:+ | gene-YDR469W_NCIM3186 | rna-NM_001180777.3_NCIM3186 | cds-NP_010757.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1338488-1339015:+ | gene-YDR469W_NCYC1407 | rna-NM_001180777.3_NCYC1407 | cds-NP_010757.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1349334-1349861:+ | gene-YDR469W_PE2H3 | rna-NM_001180777.3_PE2H3 | cds-NP_010757.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1354907-1355434:+ | gene-YDR469W_PE2H4 | rna-NM_001180777.3_PE2H4 | cds-NP_010757.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1399015-1399542:+ | gene-YDR469W_S288C | rna-NM_001180777.3_S288C | cds-NP_010757.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:217619-218146:- | gene-YDR469W_SA1 | rna-NM_001180777.3_SA1 | cds-NP_010757.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1350048-1350575:+ | gene-YDR469W_ThermosaccDry | rna-NM_001180777.3_ThermosaccDry | cds-NP_010757.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1365777-1366304:+ | gene-YDR469W_VR1 | rna-NM_001180777.3_VR1 | cds-NP_010757.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:392720-393247:+ | gene-YDR469W_ZTW1 | rna-NM_001180777.3_ZTW1 | cds-NP_010757.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1353086-1353613:+ | gene-YDR469W_Sparadoxus | rna-NM_001180777.3_Sparadoxus | cds-NP_010757.3_Sparadoxus | 87.5 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |