Gene name: SCW4
Reference locus (S288C): YGR279C
Gene biotype: protein_coding
Description: Probable family 17 glucosidase SCW4; Cell wall protein with similarity to glucanases; scw4 scw10 double mutants exhibit defects in mating; SCW4 has a paralog, SCW10, that arose from the whole genome duplication; Belongs to the glycosyl hydrolase 17 family
Top 10 interactors (score): CIS3 (0.888); EXG1 (0.817); TOS1 (0.808); GAS5 (0.799); HSP150 (0.775); CTS1 (0.769); CRH1 (0.735); SUN4 (0.705); SCW10 (0.704); GAS3 (0.693); PIR3 (0.69); CCW12 (0.689); PIR1 (0.677); BGL2 (0.675); GAS1 (0.653); SED1 (0.628); UTH1 (0.621); CCW14 (0.618); KEX2 (0.585); PST1 (0.582)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:1014217-1015377:- | gene-YGR279C_AKU4011 | rna-NM_001181408.1_AKU4011 | cds-NP_011795.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000020.1:1864-3024:+ | gene-YGR279C_BG1 | rna-NM_001181408.1_BG1 | cds-NP_011795.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:1022782-1023942:- | gene-YGR279C_Bruggeman | rna-NM_001181408.1_Bruggeman | cds-NP_011795.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:1022257-1023417:- | gene-YGR279C_CAT1 | rna-NM_001181408.1_CAT1 | cds-NP_011795.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:1017085-1018245:- | gene-YGR279C_CBS1585 | rna-NM_001181408.1_CBS1585 | cds-NP_011795.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:1020763-1021923:- | gene-YGR279C_CBS436 | rna-NM_001181408.1_CBS436 | cds-NP_011795.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:1007977-1009137:- | gene-YGR279C_CBS6412 | rna-NM_001181408.1_CBS6412 | cds-NP_011795.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:1014030-1015190:- | gene-YGR279C_CBS6413 | rna-NM_001181408.1_CBS6413 | cds-NP_011795.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:1048523-1049683:- | gene-YGR279C_CENPK1137D | rna-NM_001181408.1_CENPK1137D | cds-NP_011795.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:1002067-1003227:- | gene-YGR279C_EthanolRed | rna-NM_001181408.1_EthanolRed | cds-NP_011795.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:1006873-1008033:- | gene-YGR279C_FaliES1 | rna-NM_001181408.1_FaliES1 | cds-NP_011795.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000076.1:22238-23398:+ | gene-YGR279C_JAY291 | rna-NM_001181408.1_JAY291 | cds-NP_011795.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:1020516-1021676:- | gene-YGR279C_MUCL30387 | rna-NM_001181408.1_MUCL30387 | cds-NP_011795.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:1018648-1019808:- | gene-YGR279C_MUCL30388 | rna-NM_001181408.1_MUCL30388 | cds-NP_011795.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:1012191-1013351:- | gene-YGR279C_MUCL39482 | rna-NM_001181408.1_MUCL39482 | cds-NP_011795.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:1030118-1031278:- | gene-YGR279C_MUCL42920 | rna-NM_001181408.1_MUCL42920 | cds-NP_011795.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:1048798-1049958:- | gene-YGR279C_NCIM3186 | rna-NM_001181408.1_NCIM3186 | cds-NP_011795.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:1007822-1008982:- | gene-YGR279C_NCYC1407 | rna-NM_001181408.1_NCYC1407 | cds-NP_011795.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:1033068-1034228:- | gene-YGR279C_PE2H3 | rna-NM_001181408.1_PE2H3 | cds-NP_011795.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:1037907-1039067:- | gene-YGR279C_PE2H4 | rna-NM_001181408.1_PE2H4 | cds-NP_011795.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:1048798-1049958:- | gene-YGR279C_S288C | rna-NM_001181408.1_S288C | cds-NP_011795.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000063.1:47066-48226:- | gene-YGR279C_SA1 | rna-NM_001181408.1_SA1 | cds-NP_011795.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:1027393-1028553:- | gene-YGR279C_ThermosaccDry | rna-NM_001181408.1_ThermosaccDry | cds-NP_011795.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:1133243-1134403:- | gene-YGR279C_VR1 | rna-NM_001181408.1_VR1 | cds-NP_011795.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:328796-329956:- | gene-YGR279C_ZTW1 | rna-NM_001181408.1_ZTW1 | cds-NP_011795.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:1019488-1020651:- | gene-YGR279C_Sparadoxus | rna-NM_001181408.1_Sparadoxus | cds-NP_011795.1_Sparadoxus | 93.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |