Gene name: SCS7
Reference locus (S288C): YMR272C
Gene biotype: protein_coding
Description: Ceramide very long chain fatty acid hydroxylase SCS7; Sphingolipid alpha-hydroxylase; functions in the alpha-hydroxylation of sphingolipid-associated very long chain fatty acids, has both cytochrome b5-like and hydroxylase/desaturase domains, not essential for growth
Top 10 interactors (score): LAG1 (0.985); AUR1 (0.983); LAC1 (0.981); OLE1 (0.975); SUR2 (0.966); LIP1 (0.954); ERG3 (0.953); KEI1 (0.91); CSG2 (0.882); LCB2 (0.844); SUR1 (0.837); TSC10 (0.825); ERG11 (0.799); ERG5 (0.791); ERG25 (0.789); LCB4 (0.778); SEA4 (0.767); LCB1 (0.764); NCP1 (0.762); ELO3 (0.749)
Homologues (species, bitscore): FA2H (Homo sapiens, 175.3); Fa2h (Mus musculus, 175.3); fa2h (Danio rerio, 199.1); fa2h (Xenopus tropicalis, 196.8); fa2h (Drosophila melanogaster, 145.6); fath-1 (Caenorhabditis elegans, 149.1); T29F13.2 (Arabidopsis thaliana, 173.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:848703-849857:- | gene-YMR272C_AKU4011 | rna-NM_001182779.1_AKU4011 | cds-NP_013999.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:103811-104965:+ | gene-YMR272C_BG1 | rna-NM_001182779.1_BG1 | cds-NP_013999.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:793920-795074:- | gene-YMR272C_Bruggeman | rna-NM_001182779.1_Bruggeman | cds-NP_013999.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:797186-798340:- | gene-YMR272C_CAT1 | rna-NM_001182779.1_CAT1 | cds-NP_013999.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:780953-782107:- | gene-YMR272C_CBS1585 | rna-NM_001182779.1_CBS1585 | cds-NP_013999.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:803259-804413:- | gene-YMR272C_CBS436 | rna-NM_001182779.1_CBS436 | cds-NP_013999.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:892509-893663:- | gene-YMR272C_CBS6412 | rna-NM_001182779.1_CBS6412 | cds-NP_013999.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:780056-781210:- | gene-YMR272C_CBS6413 | rna-NM_001182779.1_CBS6413 | cds-NP_013999.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:804169-805323:- | gene-YMR272C_CENPK1137D | rna-NM_001182779.1_CENPK1137D | cds-NP_013999.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:841392-842546:- | gene-YMR272C_EthanolRed | rna-NM_001182779.1_EthanolRed | cds-NP_013999.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:787419-788573:- | gene-YMR272C_FaliES1 | rna-NM_001182779.1_FaliES1 | cds-NP_013999.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000262.1:63180-64334:+ | gene-YMR272C_JAY291 | rna-NM_001182779.1_JAY291 | cds-NP_013999.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:787745-788899:- | gene-YMR272C_MUCL30387 | rna-NM_001182779.1_MUCL30387 | cds-NP_013999.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:797132-798286:- | gene-YMR272C_MUCL30388 | rna-NM_001182779.1_MUCL30388 | cds-NP_013999.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:782041-783195:- | gene-YMR272C_MUCL39482 | rna-NM_001182779.1_MUCL39482 | cds-NP_013999.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:790089-791243:- | gene-YMR272C_MUCL42920 | rna-NM_001182779.1_MUCL42920 | cds-NP_013999.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:809577-810731:- | gene-YMR272C_NCIM3186 | rna-NM_001182779.1_NCIM3186 | cds-NP_013999.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:781666-782820:- | gene-YMR272C_NCYC1407 | rna-NM_001182779.1_NCYC1407 | cds-NP_013999.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:797468-798622:- | gene-YMR272C_PE2H3 | rna-NM_001182779.1_PE2H3 | cds-NP_013999.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:793454-794608:- | gene-YMR272C_PE2H4 | rna-NM_001182779.1_PE2H4 | cds-NP_013999.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:809623-810777:- | gene-YMR272C_S288C | rna-NM_001182779.1_S288C | cds-NP_013999.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000114.1:1432-2586:- | gene-YMR272C_SA1 | rna-NM_001182779.1_SA1 | cds-NP_013999.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:783588-784742:- | gene-YMR272C_ThermosaccDry | rna-NM_001182779.1_ThermosaccDry | cds-NP_013999.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:796822-797976:- | gene-YMR272C_VR1 | rna-NM_001182779.1_VR1 | cds-NP_013999.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:198785-199939:- | gene-YMR272C_ZTW1 | rna-NM_001182779.1_ZTW1 | cds-NP_013999.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:801991-803145:- | gene-YMR272C_Sparadoxus | rna-NM_001182779.1_Sparadoxus | cds-NP_013999.1_Sparadoxus | 92.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |