Gene name: SCP160
Reference locus (S288C): YJL080C
Gene biotype: protein_coding
Description: Protein SCP160; Essential RNA-binding G protein effector of mating response pathway; ligand-activated RNA-binding protein that delivers RNAs involved in polarization and perpetualizing mating signal to shmoo tip during pheromone signaling; Scp160p-mediated RNA trafficking essential for chemotropism and successful mating; mainly associated with nuclear envelope and ER, interacts in mRNA-dependent manner with translating ribosomes via multiple KH domains, similar to vertebrate vigilins
Top 10 interactors (score): BFR1 (0.988); ASC1 (0.972); SNF4 (0.962); EAP1 (0.944); PAB1 (0.926); SEC61 (0.909); TEF1 (0.907); PUF3 (0.902); SFB3 (0.9); LHS1 (0.896); HEK2 (0.895); DHH1 (0.872); NAM8 (0.852); HPF1 (0.85); YOR338W (0.848); TIF4631 (0.848); SNF1 (0.844); ZUO1 (0.829); HRB1 (0.789); MYO4 (0.787)
Homologues (species, bitscore): HDLBP (Homo sapiens, 171.0); Hdlbp (Mus musculus, 172.6); hdlbpb (Danio rerio, 171.0); hdlbp (Xenopus tropicalis, 167.2); Dp1 (Drosophila melanogaster, 175.6); vgln-1 (Caenorhabditis elegans, 124.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:268254-271922:- | gene-YJL080C_AKU4011 | rna-NM_001181513.1_AKU4011 | cds-NP_012455.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:342514-346182:+ | gene-YJL080C_BG1 | rna-NM_001181513.1_BG1 | cds-NP_012455.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:279700-283368:- | gene-YJL080C_Bruggeman | rna-NM_001181513.1_Bruggeman | cds-NP_012455.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:284595-288263:- | gene-YJL080C_CAT1 | rna-NM_001181513.1_CAT1 | cds-NP_012455.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:279914-283582:- | gene-YJL080C_CBS1585 | rna-NM_001181513.1_CBS1585 | cds-NP_012455.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:298047-301715:- | gene-YJL080C_CBS436 | rna-NM_001181513.1_CBS436 | cds-NP_012455.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:269012-272680:- | gene-YJL080C_CBS6412 | rna-NM_001181513.1_CBS6412 | cds-NP_012455.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:270367-274035:- | gene-YJL080C_CBS6413 | rna-NM_001181513.1_CBS6413 | cds-NP_012455.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:268022-271690:- | gene-YJL080C_CENPK1137D | rna-NM_001181513.1_CENPK1137D | cds-NP_012455.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:272104-275772:- | gene-YJL080C_EthanolRed | rna-NM_001181513.1_EthanolRed | cds-NP_012455.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:283678-287346:- | gene-YJL080C_FaliES1 | rna-NM_001181513.1_FaliES1 | cds-NP_012455.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000138.1:81317-84987:- | gene-YJL080C_JAY291 | rna-NM_001181513.1_JAY291 | cds-NP_012455.1_JAY291 | 99.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:281970-285638:- | gene-YJL080C_MUCL30387 | rna-NM_001181513.1_MUCL30387 | cds-NP_012455.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:278046-281714:- | gene-YJL080C_MUCL30388 | rna-NM_001181513.1_MUCL30388 | cds-NP_012455.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:272672-276340:- | gene-YJL080C_MUCL39482 | rna-NM_001181513.1_MUCL39482 | cds-NP_012455.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:278877-282545:- | gene-YJL080C_MUCL42920 | rna-NM_001181513.1_MUCL42920 | cds-NP_012455.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:285537-289205:- | gene-YJL080C_NCIM3186 | rna-NM_001181513.1_NCIM3186 | cds-NP_012455.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:271360-275028:- | gene-YJL080C_NCYC1407 | rna-NM_001181513.1_NCYC1407 | cds-NP_012455.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:283744-287412:- | gene-YJL080C_PE2H3 | rna-NM_001181513.1_PE2H3 | cds-NP_012455.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:283388-287056:- | gene-YJL080C_PE2H4 | rna-NM_001181513.1_PE2H4 | cds-NP_012455.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:285558-289226:- | gene-YJL080C_S288C | rna-NM_001181513.1_S288C | cds-NP_012455.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:81232-84900:- | gene-YJL080C_SA1 | rna-NM_001181513.1_SA1 | cds-NP_012455.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:277093-280761:- | gene-YJL080C_ThermosaccDry | rna-NM_001181513.1_ThermosaccDry | cds-NP_012455.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:278620-282288:- | gene-YJL080C_VR1 | rna-NM_001181513.1_VR1 | cds-NP_012455.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:258446-262114:- | gene-YJL080C_ZTW1 | rna-NM_001181513.1_ZTW1 | cds-NP_012455.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:282517-286182:- | gene-YJL080C_Sparadoxus | rna-NM_001181513.1_Sparadoxus | cds-NP_012455.1_Sparadoxus | 92.3 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |