Gene name: SCP1
Reference locus (S288C): YOR367W
Gene biotype: protein_coding
Description: Transgelin; Component of yeast cortical actin cytoskeleton; binds and cross links actin filaments; originally identified by its homology to calponin (contains a calponin-like repeat) but the Scp1p domain structure is more similar to transgelin
Top 10 interactors (score): SAC6 (0.991); ACT1 (0.977); ABP1 (0.964); FPR1 (0.962); COF1 (0.947); ARP2 (0.886); TPM2 (0.886); PFY1 (0.869); TPM1 (0.853); ELO3 (0.853); LAS17 (0.818); ETT1 (0.747); CRN1 (0.742); LSB6 (0.728); ATX1 (0.721); PRK1 (0.715); AIM21 (0.712); YSC84 (0.709); MMS2 (0.706); YAP1801 (0.657)
Homologues (species, bitscore): TAGLN2 (Homo sapiens, 89.0); Tagln2 (Mus musculus, 89.4); tagln2 (Danio rerio, 83.6); tagln2 (Xenopus tropicalis, 77.8); Chd64 (Drosophila melanogaster, 93.6); cpn-1 (Caenorhabditis elegans, 71.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:1012607-1013209:+ | gene-YOR367W_AKU4011 | rna-NM_001183787.3_AKU4011 | cds-NP_015012.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000078.1:49768-50370:+ | gene-YOR367W_BG1 | rna-NM_001183787.3_BG1 | cds-NP_015012.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:997414-998016:+ | gene-YOR367W_Bruggeman | rna-NM_001183787.3_Bruggeman | cds-NP_015012.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:998060-998662:+ | gene-YOR367W_CAT1 | rna-NM_001183787.3_CAT1 | cds-NP_015012.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:997017-997619:+ | gene-YOR367W_CBS1585 | rna-NM_001183787.3_CBS1585 | cds-NP_015012.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:991823-992425:+ | gene-YOR367W_CBS436 | rna-NM_001183787.3_CBS436 | cds-NP_015012.3_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:226314-226916:+ | gene-YOR367W_CBS6412 | rna-NM_001183787.3_CBS6412 | cds-NP_015012.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:1001290-1001892:+ | gene-YOR367W_CBS6413 | rna-NM_001183787.3_CBS6413 | cds-NP_015012.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:1025829-1026431:+ | gene-YOR367W_CENPK1137D | rna-NM_001183787.3_CENPK1137D | cds-NP_015012.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:241326-241928:+ | gene-YOR367W_EthanolRed | rna-NM_001183787.3_EthanolRed | cds-NP_015012.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:994155-994757:+ | gene-YOR367W_FaliES1 | rna-NM_001183787.3_FaliES1 | cds-NP_015012.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000078.1:10919-11521:- | gene-YOR367W_JAY291 | rna-NM_001183787.3_JAY291 | cds-NP_015012.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:1006745-1007347:+ | gene-YOR367W_MUCL30387 | rna-NM_001183787.3_MUCL30387 | cds-NP_015012.3_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:1014767-1015369:+ | gene-YOR367W_MUCL30388 | rna-NM_001183787.3_MUCL30388 | cds-NP_015012.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:1003552-1004154:+ | gene-YOR367W_MUCL39482 | rna-NM_001183787.3_MUCL39482 | cds-NP_015012.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:1011164-1011766:+ | gene-YOR367W_MUCL42920 | rna-NM_001183787.3_MUCL42920 | cds-NP_015012.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:1025896-1026498:+ | gene-YOR367W_NCIM3186 | rna-NM_001183787.3_NCIM3186 | cds-NP_015012.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:1004560-1005162:+ | gene-YOR367W_NCYC1407 | rna-NM_001183787.3_NCYC1407 | cds-NP_015012.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:999827-1000429:+ | gene-YOR367W_PE2H3 | rna-NM_001183787.3_PE2H3 | cds-NP_015012.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:1016178-1016780:+ | gene-YOR367W_PE2H4 | rna-NM_001183787.3_PE2H4 | cds-NP_015012.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:1026007-1026609:+ | gene-YOR367W_S288C | rna-NM_001183787.3_S288C | cds-NP_015012.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000016.1:130541-131143:+ | gene-YOR367W_SA1 | rna-NM_001183787.3_SA1 | cds-NP_015012.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:993325-993927:+ | gene-YOR367W_ThermosaccDry | rna-NM_001183787.3_ThermosaccDry | cds-NP_015012.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:1054809-1055411:+ | gene-YOR367W_VR1 | rna-NM_001183787.3_VR1 | cds-NP_015012.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:726046-726648:+ | gene-YOR367W_ZTW1 | rna-NM_001183787.3_ZTW1 | cds-NP_015012.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:1000082-1000684:+ | gene-YOR367W_Sparadoxus | rna-NM_001183787.3_Sparadoxus | cds-NP_015012.3_Sparadoxus | 90.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |