Gene name: SCO2
Reference locus (S288C): YBR024W
Gene biotype: protein_coding
Description: Putative thioredoxin peroxidase sco2; Protein anchored to mitochondrial inner membrane; may have a redundant function with Sco1p in delivery of copper to cytochrome c oxidase; interacts with Cox2p; SCO2 has a paralog, SCO1, that arose from the whole genome duplication
Top 10 interactors (score): COX17 (0.985); COX11 (0.973); COX10 (0.972); COX15 (0.96); COX20 (0.945); SHY1 (0.931); COX18 (0.901); COX2 (0.892); COX12 (0.889); COX19 (0.853); PNT1 (0.826); COA6 (0.806); RIP1 (0.802); OXA1 (0.801); SOD1 (0.791); CTR2 (0.782); CCC2 (0.781); SDH1 (0.755); COA2 (0.749); COX6 (0.736)
Homologues (species, bitscore): SCO1 (Homo sapiens, 158.7); Sco1 (Mus musculus, 163.3); SCO1 (Danio rerio, 171.4); SCO2 (Xenopus tropicalis, 155.6); Scox (Drosophila melanogaster, 164.5); sco-1 (Caenorhabditis elegans, 147.9); HCC1 (Arabidopsis thaliana, 171.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:271875-272780:+ | gene-YBR024W_AKU4011 | rna-NM_001178372.1_AKU4011 | cds-NP_009580.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:262025-262930:+ | gene-YBR024W_BG1 | rna-NM_001178372.1_BG1 | cds-NP_009580.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:272607-273512:+ | gene-YBR024W_Bruggeman | rna-NM_001178372.1_Bruggeman | cds-NP_009580.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:275791-276696:+ | gene-YBR024W_CAT1 | rna-NM_001178372.1_CAT1 | cds-NP_009580.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:263912-264817:+ | gene-YBR024W_CBS1585 | rna-NM_001178372.1_CBS1585 | cds-NP_009580.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:272179-273084:+ | gene-YBR024W_CBS436 | rna-NM_001178372.1_CBS436 | cds-NP_009580.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:362416-363321:+ | gene-YBR024W_CBS6412 | rna-NM_001178372.1_CBS6412 | cds-NP_009580.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:269280-270185:+ | gene-YBR024W_CBS6413 | rna-NM_001178372.1_CBS6413 | cds-NP_009580.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:283193-284098:+ | gene-YBR024W_CENPK1137D | rna-NM_001178372.1_CENPK1137D | cds-NP_009580.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:398887-399792:+ | gene-YBR024W_EthanolRed | rna-NM_001178372.1_EthanolRed | cds-NP_009580.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:286983-287888:+ | gene-YBR024W_FaliES1 | rna-NM_001178372.1_FaliES1 | cds-NP_009580.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000048.1:9708-10613:- | gene-YBR024W_JAY291 | rna-NM_001178372.1_JAY291 | cds-NP_009580.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:273206-274111:+ | gene-YBR024W_MUCL30387 | rna-NM_001178372.1_MUCL30387 | cds-NP_009580.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:273460-274365:+ | gene-YBR024W_MUCL30388 | rna-NM_001178372.1_MUCL30388 | cds-NP_009580.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:263894-264799:+ | gene-YBR024W_MUCL39482 | rna-NM_001178372.1_MUCL39482 | cds-NP_009580.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:271349-272254:+ | gene-YBR024W_MUCL42920 | rna-NM_001178372.1_MUCL42920 | cds-NP_009580.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:289242-290147:+ | gene-YBR024W_NCIM3186 | rna-NM_001178372.1_NCIM3186 | cds-NP_009580.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:265071-265976:+ | gene-YBR024W_NCYC1407 | rna-NM_001178372.1_NCYC1407 | cds-NP_009580.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:277250-278155:+ | gene-YBR024W_PE2H3 | rna-NM_001178372.1_PE2H3 | cds-NP_009580.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:274918-275823:+ | gene-YBR024W_PE2H4 | rna-NM_001178372.1_PE2H4 | cds-NP_009580.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:289445-290350:+ | gene-YBR024W_S288C | rna-NM_001178372.1_S288C | cds-NP_009580.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000037.1:18354-19259:- | gene-YBR024W_SA1 | rna-NM_001178372.1_SA1 | cds-NP_009580.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:286692-287597:+ | gene-YBR024W_ThermosaccDry | rna-NM_001178372.1_ThermosaccDry | cds-NP_009580.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:268602-269507:+ | gene-YBR024W_VR1 | rna-NM_001178372.1_VR1 | cds-NP_009580.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:262671-263576:+ | gene-YBR024W_ZTW1 | rna-NM_001178372.1_ZTW1 | cds-NP_009580.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:298997-299902:+ | gene-YBR024W_Sparadoxus | rna-NM_001178372.1_Sparadoxus | cds-NP_009580.1_Sparadoxus | 91.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |