Gene name: SCL1
Reference locus (S288C): YGL011C
Gene biotype: protein_coding
Description: Alpha 1 subunit of the 20S proteasome; involved in the degradation of ubiquitinated substrates; 20S proteasome is the core complex of the 26S proteasome; essential for growth; detected in the mitochondria; Belongs to the peptidase T1A family
Top 10 interactors (score): RPT4 (0.999); RPN7 (0.999); PRE2 (0.999); RPN12 (0.999); RPN5 (0.999); RPT1 (0.999); RPN6 (0.999); RPN2 (0.999); PRE7 (0.999); PRE1 (0.999); PUP3 (0.999); PRE4 (0.999); RPT3 (0.999); PRE10 (0.999); RPT6 (0.999); RPN3 (0.999); PRE8 (0.999); PRE5 (0.999); RPN1 (0.999); RPT2 (0.999)
Homologues (species, bitscore): PSMA6 (Homo sapiens, 273.9); Psma6 (Mus musculus, 274.6); zgc:92716 (Danio rerio, 276.6); psma6 (Xenopus tropicalis, 270.0); Prosalpha1 (Drosophila melanogaster, 246.9); pas-1 (Caenorhabditis elegans, 241.5); At5g35590 (Arabidopsis thaliana, 253.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:476540-477298:- | gene-YGL011C_AKU4011 | rna-NM_001180876.3_AKU4011 | cds-NP_011504.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000060.1:98812-99570:+ | gene-YGL011C_BG1 | rna-NM_001180876.3_BG1 | cds-NP_011504.3_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:477509-478267:- | gene-YGL011C_Bruggeman | rna-NM_001180876.3_Bruggeman | cds-NP_011504.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:475802-476560:- | gene-YGL011C_CAT1 | rna-NM_001180876.3_CAT1 | cds-NP_011504.3_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:478011-478769:- | gene-YGL011C_CBS1585 | rna-NM_001180876.3_CBS1585 | cds-NP_011504.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:472391-473149:- | gene-YGL011C_CBS436 | rna-NM_001180876.3_CBS436 | cds-NP_011504.3_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:470626-471384:- | gene-YGL011C_CBS6412 | rna-NM_001180876.3_CBS6412 | cds-NP_011504.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:474682-475440:- | gene-YGL011C_CBS6413 | rna-NM_001180876.3_CBS6413 | cds-NP_011504.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:474310-475068:- | gene-YGL011C_CENPK1137D | rna-NM_001180876.3_CENPK1137D | cds-NP_011504.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:464907-465665:- | gene-YGL011C_EthanolRed | rna-NM_001180876.3_EthanolRed | cds-NP_011504.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:468163-468921:- | gene-YGL011C_FaliES1 | rna-NM_001180876.3_FaliES1 | cds-NP_011504.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000020.1:6798-7556:- | gene-YGL011C_JAY291 | rna-NM_001180876.3_JAY291 | cds-NP_011504.3_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:474732-475490:- | gene-YGL011C_MUCL30387 | rna-NM_001180876.3_MUCL30387 | cds-NP_011504.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:477281-478039:- | gene-YGL011C_MUCL30388 | rna-NM_001180876.3_MUCL30388 | cds-NP_011504.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:473850-474608:- | gene-YGL011C_MUCL39482 | rna-NM_001180876.3_MUCL39482 | cds-NP_011504.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:483287-484045:- | gene-YGL011C_MUCL42920 | rna-NM_001180876.3_MUCL42920 | cds-NP_011504.3_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:474489-475247:- | gene-YGL011C_NCIM3186 | rna-NM_001180876.3_NCIM3186 | cds-NP_011504.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:467872-468630:- | gene-YGL011C_NCYC1407 | rna-NM_001180876.3_NCYC1407 | cds-NP_011504.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:470566-471324:- | gene-YGL011C_PE2H3 | rna-NM_001180876.3_PE2H3 | cds-NP_011504.3_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:475616-476374:- | gene-YGL011C_PE2H4 | rna-NM_001180876.3_PE2H4 | cds-NP_011504.3_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:474489-475247:- | gene-YGL011C_S288C | rna-NM_001180876.3_S288C | cds-NP_011504.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000021.1:80337-81095:+ | gene-YGL011C_SA1 | rna-NM_001180876.3_SA1 | cds-NP_011504.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:487488-488246:- | gene-YGL011C_ThermosaccDry | rna-NM_001180876.3_ThermosaccDry | cds-NP_011504.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:577573-578331:- | gene-YGL011C_VR1 | rna-NM_001180876.3_VR1 | cds-NP_011504.3_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:466094-466852:- | gene-YGL011C_ZTW1 | rna-NM_001180876.3_ZTW1 | cds-NP_011504.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:475638-476396:- | gene-YGL011C_Sparadoxus | rna-NM_001180876.3_Sparadoxus | cds-NP_011504.3_Sparadoxus | 91.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |