Gene name: SCD5
Reference locus (S288C): YOR329C
Gene biotype: protein_coding
Description: Protein required for normal actin organization and endocytosis; targeting subunit for protein phosphatase type 1; undergoes Crm1p-dependent nuclear-cytoplasmic shuttling; multicopy suppressor of clathrin deficiency
Top 10 interactors (score): GLC7 (0.957); PAN1 (0.922); END3 (0.894); PRK1 (0.875); SLA1 (0.847); HIP1 (0.78); CLC1 (0.78); ARK1 (0.774); ABP1 (0.773); GIP1 (0.748); YAP1801 (0.728); ENT1 (0.699); GAC1 (0.694); AIM21 (0.691); RED1 (0.656); SLA2 (0.65); KAP120 (0.65); BNI4 (0.613); BUD14 (0.594); BSP1 (0.593)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:927228-929846:- | gene-YOR329C_AKU4011 | rna-NM_001183749.3_AKU4011 | cds-NP_014974.3_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:329283-331901:- | gene-YOR329C_BG1 | rna-NM_001183749.3_BG1 | cds-NP_014974.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:912636-915254:- | gene-YOR329C_Bruggeman | rna-NM_001183749.3_Bruggeman | cds-NP_014974.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:913351-915969:- | gene-YOR329C_CAT1 | rna-NM_001183749.3_CAT1 | cds-NP_014974.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:911051-913669:- | gene-YOR329C_CBS1585 | rna-NM_001183749.3_CBS1585 | cds-NP_014974.3_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:908867-911485:- | gene-YOR329C_CBS436 | rna-NM_001183749.3_CBS436 | cds-NP_014974.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:906761-909379:- | gene-YOR329C_CBS6412 | rna-NM_001183749.3_CBS6412 | cds-NP_014974.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:915890-918508:- | gene-YOR329C_CBS6413 | rna-NM_001183749.3_CBS6413 | cds-NP_014974.3_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:936506-939124:- | gene-YOR329C_CENPK1137D | rna-NM_001183749.3_CENPK1137D | cds-NP_014974.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:903143-905761:- | gene-YOR329C_EthanolRed | rna-NM_001183749.3_EthanolRed | cds-NP_014974.3_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:908766-911384:- | gene-YOR329C_FaliES1 | rna-NM_001183749.3_FaliES1 | cds-NP_014974.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000078.1:91885-94503:+ | gene-YOR329C_JAY291 | rna-NM_001183749.3_JAY291 | cds-NP_014974.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:917121-919739:- | gene-YOR329C_MUCL30387 | rna-NM_001183749.3_MUCL30387 | cds-NP_014974.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:924892-927510:- | gene-YOR329C_MUCL30388 | rna-NM_001183749.3_MUCL30388 | cds-NP_014974.3_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:917596-920214:- | gene-YOR329C_MUCL39482 | rna-NM_001183749.3_MUCL39482 | cds-NP_014974.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:927051-929669:- | gene-YOR329C_MUCL42920 | rna-NM_001183749.3_MUCL42920 | cds-NP_014974.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:936620-939238:- | gene-YOR329C_NCIM3186 | rna-NM_001183749.3_NCIM3186 | cds-NP_014974.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:918596-921214:- | gene-YOR329C_NCYC1407 | rna-NM_001183749.3_NCYC1407 | cds-NP_014974.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:916816-919434:- | gene-YOR329C_PE2H3 | rna-NM_001183749.3_PE2H3 | cds-NP_014974.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:933168-935786:- | gene-YOR329C_PE2H4 | rna-NM_001183749.3_PE2H4 | cds-NP_014974.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:936731-939349:- | gene-YOR329C_S288C | rna-NM_001183749.3_S288C | cds-NP_014974.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000016.1:47059-49677:- | gene-YOR329C_SA1 | rna-NM_001183749.3_SA1 | cds-NP_014974.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:907949-910567:- | gene-YOR329C_ThermosaccDry | rna-NM_001183749.3_ThermosaccDry | cds-NP_014974.3_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:971236-973854:- | gene-YOR329C_VR1 | rna-NM_001183749.3_VR1 | cds-NP_014974.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:640820-643438:- | gene-YOR329C_ZTW1 | rna-NM_001183749.3_ZTW1 | cds-NP_014974.3_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:915173-917806:- | gene-YOR329C_Sparadoxus | rna-NM_001183749.3_Sparadoxus | cds-NP_014974.3_Sparadoxus | 87.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |