Gene name: SCC4
Reference locus (S288C): YER147C
Gene biotype: protein_coding
Description: MAU2 chromatid cohesion factor homolog; Subunit of cohesin loading factor (Scc2p-Scc4p); complex is required for the loading of cohesin complexes onto chromosomes; involved in establishing sister chromatid cohesion during double-strand break repair via phosphorylated histone H2AX
Top 10 interactors (score): SCC2 (0.997); MCD1 (0.953); PDS5 (0.948); SMC3 (0.947); ECO1 (0.923); IRR1 (0.919); SMC1 (0.888); RAD61 (0.882); CTF19 (0.871); CHL1 (0.753); ESP1 (0.745); IRC5 (0.698); STH1 (0.671); PUG1 (0.671); CHL4 (0.664); CTF18 (0.603); SMC5 (0.575); HOS1 (0.572); SLD3 (0.567); MTW1 (0.561)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:450472-452346:- | gene-YER147C_AKU4011 | rna-NM_001179037.3_AKU4011 | cds-NP_011074.3_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000176.1:92215-94089:+ | gene-YER147C_BG1 | rna-NM_001179037.3_BG1 | cds-NP_011074.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:461760-463634:- | gene-YER147C_Bruggeman | rna-NM_001179037.3_Bruggeman | cds-NP_011074.3_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:449609-451483:- | gene-YER147C_CAT1 | rna-NM_001179037.3_CAT1 | cds-NP_011074.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:450293-452163:- | gene-YER147C_CBS1585 | rna-NM_001179037.3_CBS1585 | cds-NP_011074.3_CBS1585 | 99.0 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:454097-455971:- | gene-YER147C_CBS436 | rna-NM_001179037.3_CBS436 | cds-NP_011074.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:448802-450676:- | gene-YER147C_CBS6412 | rna-NM_001179037.3_CBS6412 | cds-NP_011074.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:456347-458221:- | gene-YER147C_CBS6413 | rna-NM_001179037.3_CBS6413 | cds-NP_011074.3_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:460741-462615:- | gene-YER147C_CENPK1137D | rna-NM_001179037.3_CENPK1137D | cds-NP_011074.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:456761-458635:- | gene-YER147C_EthanolRed | rna-NM_001179037.3_EthanolRed | cds-NP_011074.3_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:457347-459221:- | gene-YER147C_FaliES1 | rna-NM_001179037.3_FaliES1 | cds-NP_011074.3_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000111.1:27266-29140:+ | gene-YER147C_JAY291 | rna-NM_001179037.3_JAY291 | cds-NP_011074.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:450502-452376:- | gene-YER147C_MUCL30387 | rna-NM_001179037.3_MUCL30387 | cds-NP_011074.3_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:453401-455275:- | gene-YER147C_MUCL30388 | rna-NM_001179037.3_MUCL30388 | cds-NP_011074.3_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:446241-448115:- | gene-YER147C_MUCL39482 | rna-NM_001179037.3_MUCL39482 | cds-NP_011074.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:458321-460195:- | gene-YER147C_MUCL42920 | rna-NM_001179037.3_MUCL42920 | cds-NP_011074.3_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:462967-464841:- | gene-YER147C_NCIM3186 | rna-NM_001179037.3_NCIM3186 | cds-NP_011074.3_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:455712-457586:- | gene-YER147C_NCYC1407 | rna-NM_001179037.3_NCYC1407 | cds-NP_011074.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:471398-473272:- | gene-YER147C_PE2H3 | rna-NM_001179037.3_PE2H3 | cds-NP_011074.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:461339-463213:- | gene-YER147C_PE2H4 | rna-NM_001179037.3_PE2H4 | cds-NP_011074.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:462968-464842:- | gene-YER147C_S288C | rna-NM_001179037.3_S288C | cds-NP_011074.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000030.1:20868-22742:- | gene-YER147C_SA1 | rna-NM_001179037.3_SA1 | cds-NP_011074.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:458147-460021:- | gene-YER147C_ThermosaccDry | rna-NM_001179037.3_ThermosaccDry | cds-NP_011074.3_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:451262-453136:- | gene-YER147C_VR1 | rna-NM_001179037.3_VR1 | cds-NP_011074.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000010.1:13102-14976:- | gene-YER147C_ZTW1 | rna-NM_001179037.3_ZTW1 | cds-NP_011074.3_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:458965-460839:- | gene-YER147C_Sparadoxus | rna-NM_001179037.3_Sparadoxus | cds-NP_011074.3_Sparadoxus | 88.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |